| Maximum-likelihood analysis using TREE-PUZZLE (2003) | |||||||||||
Abstract | |||||||||||
| TREE-PUZZLE provides means to analyze and reconstruct evolutionary relationships and trees based on quartets, i.e. groups of 4 sequences. Basic Protocol 1 explains how to reconstruct trees based on the maximum-likelihood principle and quartet puzzling. Basic Protocol 2 discusses likelihood mapping, a method to visualize phylogenetic content in a multiple sequence alignment. Basic Protocol 3 explains how to compare tree topologies using different tests. | |||||||||||
Details der Publikation | |||||||||||
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