Gruber, A.R., Kilgus, C., Mosig, A., Hofacker, I.L., Hennig, W., Stadler, P.F.
The 7SK small nuclear RNA (snRNA) is a key player in the regulation of polymerase (pol) II transcription. The 7SK RNA was long believed to be specific to vertebrates where it is highly conserved....
RNAalifold. Improved consensus structure prediction for RNA alignments (2008)
Bernhart, S.H., Hofacker, I.L., Will, S., Gruber, A.R., Stadler, P.F.
Background The prediction of a consensus structure for a set of related RNAs is an important first step for subsequent analyses. RNAalifold, which computes the minimum energy structure that is...
RNAalifold. Improved consensus structure prediction for RNA alignments (2008)
Bernhart, S.H., Hofacker, I.L., Will, S., Gruber, A.R., Stadler, P.F.
Background The prediction of a consensus structure for a set of related RNAs is an important first step for subsequent analyses. RNAalifold, which computes the minimum energy structure that is...
Structured RNAs in the ENCODE selected regions of the human genome (2007)
Washietl, S., Pedersen, J.S., Korbel, J.O., Stocsits, C., Gruber, A.R., Hackermüller, J., ...
Functional RNA structures play an important role both in the context of noncoding RNA transcripts as well as regulatory elements in mRNAs. Here we present a computational study to detect functional...