Kanhere, Aditi, Vingron, Martin
Abstract Background Horizontal gene transfer (HGT) is an important process, which contributes in bacterial pathogenesis and drug resistance. A number of methods have been proposed for detection of...
Predicting transcription factor affinities to DNA from a biophysical model (2007)
Roider, Helge G., Kanhere, Aditi, Manke, Thomas, Vingron, Martin
Motivation: Theoretical efforts to understand the regulation of gene expression are traditionally centered around the identification of transcription factor binding sites at specific DNA positions....
Predicting transcription factor affinities to DNA from a biophysical model (2007)
Roider, Helge G., Kanhere, Aditi, Manke, Thomas, Vingron, Martin
Motivation: Theoretical efforts to understand the regulation of gene expression are traditionally centered around the identification of transcription factor binding sites at specific DNA positions....
During the process of transcription, RNA polymerase can exactly locate a promoter sequence in the complex maze of a genome. Several experimental studies and computational analyses have shown that the...
Abstract Background In the post-genomic era, correct gene prediction has become one of the biggest challenges in genome annotation. Improved promoter prediction methods can be one step towards...
A novel method for prokaryotic promoter prediction based on DNA stability (2005)
BACKGROUND: In the post-genomic era, correct gene prediction has become one of the biggest challenges in genome annotation. Improved promoter prediction methods can be one step towards developing...
During the process of transcription, RNA polymerase can exactly locate a promoter sequence in the complex maze of a genome. Several experimental studies and computational analyses have shown that the...
A novel method for prokaryotic promoter prediction based on DNA stability (2005)
BACKGROUND: In the post-genomic era, correct gene prediction has become one of the biggest challenges in genome annotation. Improved promoter prediction methods can be one step towards developing...
During the process of transcription, RNA polymerase can exactly locate a promoter sequence in the complex maze of a genome. Several experimental studies and computational analyses have shown that the...
Curved DNA fragments are often found near functionally important sites such as promoters and origins of replication, and hence sequence-dependent DNA curvature prediction is of great utility in...
Paul, Bindu D, Kanhere, Aditi, Chakraborty, Atanu, Bansal, Manju, Nagaraja, Valakunja
The C protein, a middle gene product of bacteriophage Mu, is the determinant of the transition from middle to late gene expression. C activates transcription from four late gene promoters, $P_{lys}$,...
Curved DNA fragments are often found near functionally important sites such as promoters and origins of replication, and hence sequence-dependent DNA curvature prediction is of great utility in...
Paul, Bindu D, Kanhere, Aditi, Chakraborty, Atanu, Bansal, Manju, Nagaraja, Valakunja
The C protein, a middle gene product of bacteriophage Mu, is the determinant of the transition from middle to late gene expression. C activates transcription from four late gene promoters, $P_{lys}$,...
Curved DNA fragments are often found near functionally important sites such as promoters and origins of replication, and hence sequence‐dependent DNA curvature prediction is of great utility in...
Curved DNA fragments are often found near functionally important sites such as promoters and origins of replication, and hence sequence-dependent DNA curvature prediction is of great utility in...
Structural properties of promoters: similarities and differences between prokaryotes and eukaryotes
During the process of transcription, RNA polymerase can exactly locate a promoter sequence in the complex maze of a genome. Several experimental studies and computational analyses have shown that the...
Curved DNA fragments are often found near functionally important sites such as promoters and origins of replication, and hence sequence-dependent DNA curvature prediction is of great utility in...
Structural properties of promoters: similarities and differences between prokaryotes and eukaryotes
During the process of transcription, RNA polymerase can exactly locate a promoter sequence in the complex maze of a genome. Several experimental studies and computational analyses have shown that the...
Roider, Helge G., Lenhard, Boris, Kanhere, Aditi, Haas, Stefan A., Vingron, Martin
Motif overrepresentation analysis of proximal promoters is a common approach to characterize the regulatory properties of co-expressed sets of genes. Here we show that these approaches perform well...