A stable backbone for the fungi (2009)
Ingo Ebersberger, Matthias Gube, Sascha Strauss, Anne Kupczok, Martin Eckart, Kerstin Voigt, ...
Fungi are abundant in the biosphere. They have fascinated mankind as far as written history goes and have considerably influenced our culture. In biotechnology, cell biology, genetics, and life...
German E-science, Ingo Paulsen, Dominic Mainz, Katrin Weller, Indra Mainz, Jochen Kohl, ...
This paper regards the two aspects of knowledge networking: data networks for information integration and social networks for information sharing in communities. The importance of ontologies as a...
Phylogenetics TreeSnatcher: Coding trees from images (2008)
Thomas Laubach, Arndt Von Haeseler, Prof Keith Cr
Summary: TreeSnatcher is a GUI-driven JAVA application for the semi-automatic recognition of multifurcating phylogenetic trees in pixel images. The program accepts an image file as input and analyzes...
BIOINFORMATICS APPLICATIONS NOTE (2008)
Bui Quang Minh, Le Sy Vinh, Arndt Von Haeseler, Heiko A. Schmidt
Vol. 21 no. 19 2005, pages 3794–3796 doi:10.1093/bioinformatics/bti594 pIQPNNI: parallel reconstruction of large maximum likelihood phylogenies
email: strimmer @ stat.uni-muenchen.de (2008)
Copyright Heiko, A. Schmidt, Korbinian Strimmer, Arndt Von Haeseler, K. Strimmer, M. Vingron, ...
Remarks: • A bug has been fixed, which tended to produce less resolved trees. Hence, versions prior to 5.2 should not be used anymore! • Some menus have been extended. Hence, the order of some...
Designer algorithms for cryptogene searches (2008)
Michael S. Waterman, Arndt Von Haeseler
Abstract RNA editing in the mitochondria of kinetoplastid protozoa describes the insertion and (or) deletion of precise numbers of uridines at precise locations in the transcribed RNA. Such genes are...
Running title: TPRs in preprotein translocation (2007)
Thomas Schlegel, Oliver Mirus, Arndt Von Haeseler, Enrico Schleiff, Enrico Schleiff
The tetratricopeptide repeats of receptors involved in protein
Large Maximum Likelihood Trees (2006)
G. Münster, D. Wolf, M. Kremer (editors, Bui Quang Minh, Bui Quang Minh, Le Sy Vinh, ...
Permission to make digital or hard copies of portions of this work for personal or classroom use is granted provided that the copies are not made or distributed for profit or commercial advantage and...
Recent Origin and Cultural Reversion of a Hunter–Gatherer Group (2005)
Hiroki Oota, Brigitte Pakendorf, Gunter Weiss, Arndt Von Haeseler, Surin Pookajorn, Wannapa Settheetham-Ishida, ...
Genes, language and culture reveal that the Mlabri reverted from an agricultural to a hunter-gatherer lifestyle, suggesting that hunter-gatherer groups might not always represent the pre-...
Recent Origin and Cultural Reversion of a Hunter–Gatherer Group (2005)
Hiroki Oota, Brigitte Pakendorf, Gunter Weiss, Arndt Von Haeseler, Surin Pookajorn, Wannapa Settheetham-Ishida, ...
Contemporary hunter–gatherer groups are often thought to serve as models of an ancient lifestyle that was typical of human populations prior to the development of agriculture. Patterns of genetic...
INVHOGEN: a database of homologous invertebrate genes (2005)
Ingo Paulsen, Arndt Von Haeseler
10Classification of proteins into families of homologous sequences constitutes the basis of functional analysis or of evolutionary studies. Here we present INVertebrate HOmologous GENes (INVHOGEN), a...
BIOINFORMATICS ORIGINAL PAPER (2005)
Tanja Gesell, Arndt Von Haeseler
Vol. 22 no. 6 2006, pages 716–722 doi:10.1093/bioinformatics/bti812 In silico sequence evolution with site-specific interactions along phylogenetic trees
TREEFINDER: A Powerful graphical . . . (2004)
Arndt Von Haeseler, Arndt Von Haeseler, Korbinian Strimmer
Background: Most analysis programs for inferring molecular phylogenies are di#cult to use, in particular for researchers with little programming experience.
Assessing variability by joint sampling of alignments and mutation rates. (2001)
Metzler, D., Fleissner, Roland, Wakolbinger, A., Haeseler, Arndt Von
A view of Neandertal genetic diversity. (2000)
Krings, M., Capelli, C., Tschentscher, F., Geisert, H., Meyer, Sonja, Haeseler, Arndt Von, ...
DNA sequence variation in a non-coding region of low recombination on the human X chromosome (1999)
Kaessmann, Henrik, Heißig, Florian, Haeseler, Arndt Von, Pääbo, Svante
Compilation of human mtDNA control region sequences (1998)
Oliva Handt, Sonja Meyer, Arndt Von Haeseler
This paper describes the organisation of a database for human mitochondrial control-region sequences. The data are divided into three ASCII files that contain aligned sequences from the hypervariable...
Likelihood-mapping: A simple method to visualize phylogenetic content of a sequence alignment (1997)
Compilation of human mtDNA control region sequences (1997)
Oliva H, Sonja Meyer, Arndt Von Haeseler
This paper describes the organisation of a database for human mitochondrial control-region sequences. The data are divided into three ASCII files that contain aligned sequences from the hypervariable...
Simulating efficiently the evolution of DNA sequences (1995)
Schoöniger, Michael, Haeseler, Arndt Von
Two menu–driven FORTRAN programs are described that simulate the evolution of DNA sequences in accordance with a user–specified model. This general stochastic model allows for an arbitrary...
Schöniger, Michael, Haeseler, Arndt Von
The Felsenstein zone of various tree reconstruction methods for a four-species tree was evaluated for two models of sequence evolution. The first model assumes correlated sequence sites, as suggested...
Computer methods for locating kinetoplastid cryptogenes. Nucleic acids research (1992)
Arndt Von Haeseler, Beat Blum, Larry Simpson, Nancy Sturm, Michael S. Waterman’i
RNA editing in the mitochondria of kinetoplastid protoza involves the insertion and/or deletion of precise numbers of uridine residues at precise locations in the transcribed RNA of certain genes....
Hofreiter, Michael, Jaenicke, Viviane, Serre, David, Haeseler, Arndt Von, Pääbo, Svante
We show that DNA molecules amplified by PCR from DNA extracted from animal bones and teeth that vary in age between 25 000 and over 50 000 years carry C→T and G→A substitutions. These...
Hofreiter, Michael, Jaenicke, Viviane, Serre, David, Haeseler, Arndt Von, Pääbo, Svante
We show that DNA molecules amplified by PCR from DNA extracted from animal bones and teeth that vary in age between 25 000 and over 50 000 years carry C→T and G→A substitutions. These...