Constantin Bannert, Martin Vingron, Jens Stoye, Hannes Luz, Sebastian Böcker
These lecture notes are the result of a collaborative effort of many people. They result from a series of lectures given by Martin Vingron (MPI/FU Berlin) and Jens Stoye (Bielefeld University) and a...
Flexible protein annotation with sequence- and secondary structure information (2008)
The number of known gene sequences is still rising at an increasing pace. A standard task in sequence analysis is homology recognition, where a database is searched for homologous sequences. Even...
Constantin Bannert, Marc Rehmsmeier, Rainer Spang, Jens Stoye
We present an algorithm for amino acid sequence classification and the detection of remote homologues. The rationale is to exploit vertical and horizontal information of a multiple alignment in a...