Dissolved oxygen (DO) concentration in the water column is an environmental parameter that is crucial for the successful development of many pelagic organisms. Hypoxia tolerance and threshold values...
Coastal hypoxia responses to remediation (2009)
W. M. Kemp, J. M. Testa, D. J. Conley, D. Gilbert, J. D. Hagy
The incidence and intensity of hypoxic waters in coastal aquatic ecosystems has been expanding in recent decades coincident with eutrophication of the coastal zone. Because of the negative effects...
Evidence for greater oxygen decline rates in the coastal ocean than in the open ocean (2009)
D. Gilbert, N. N. Rabalais, R. J. Diaz, J. Zhang
In the global ocean, the number of reported hypoxic sites (oxygen <30% saturation) is on the rise both near the coast and in the open ocean. But unfortunately, most of the papers on hypoxia only...
Modeling dissolved oxygen dynamics and coastal hypoxia: a review (2009)
M. A. Peña, S. Katsev, T. Oguz, D. Gilbert
Hypoxia occurs in marine ecosystems throughout the world, influences biogeochemical cycles of elements and may have severe impacts on marine life. Hypoxia results from complex interactions between...
Dynamics and distribution of natural and human-caused coastal hypoxia (2009)
N. N. Rabalais, R. J. Díaz, L. A. Levin, R. E. Turner, D. Gilbert, J. Zhang
Water masses can become undersaturated with oxygen when natural processes alone or in combination with anthropogenic processes create enough carbon that is aerobically decomposed faster than the rate...
Computational Methods and Software Tools for Analysis of Biochemical Networks (2008)
V. Vyshemirsky, M. Girolami, M. Calder, D. Gilbert, G. Gray, X. Liu
BPS project: Software tools for the simulation and analysis of biochemical networks
BioNessie - a grid enabled biochemical network simulator (2008)
Liu, X., Ajayi, O., Gu, X., Gilbert, D., Jiang, J., Sinnott, R.O.
No abstract available.
D Gilbert, G Torrance, J Viksna, N Dhulia, D Mamtora, David Westhead, ...
University, funded by the BBSRC/EPSRC, we have been developing a database of protein structures modelled at the level of topology and enhanced with amino-acid sequence information, ligand binding...
Daphnia as an Emerging Model for Toxicological Genomics (2008)
J. R. Shaw, M. E. Pfrender, B. D. Eads, R. Klaper, A. Callaghan, I. Colson, ...
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Lagoun-Defarge, F., Mitchell, E.A.D., Gilbert, D., Comont, L., Warner, B.G., ...
1. Cutover peatlands cover large surfaces of high potential value for biodiversity and carbon sequestration function if successfully restored but the evaluation of restoration success is not...
Nguyen-Viet, H., Bernard, N., Mitchell, E.A.D., Gilbert, D.
We studied the effects of lead pollution on testate amoebae communities living on Sphagnum fallax by growing this moss under controlled conditions. A progressive series of lead (Pb) concentration was...
Artz, RRE, Chapman, SJ, Siegenthaler, A, Mitchell, EAD, Buttler, A, Bortoluzzi, E, ...
1. While establishment of vegetation is the most visual indicator of regeneration on cutover peatland, the reinstatement of belowground functions is less well understood. Vegetation succession...
MetaNetter: inference and visualization of high-resolution metabolomic networks (2008)
Jourdan, F., Breitling, R., Barrett, M.P., Gilbert, D.
We present a Cytoscape plugin for the inference and visualization of networks from high-resolution mass spectrometry metabolomic data. The software also provides access to basic topological analysis....
Goëb, V., Dieudé, P., Daveau, R., Thomas-LOtellier, M., Jouen, F., Hau, F., ...
Objectives. To evaluate the predictive value of TNFRII 196R, PTPN22 1858T and HLA-shared epitope (SE) alleles, RFs and anti-citrullinated protein antibodies (ACPAs) for RA diagnosis in a cohort of...
BioNessie - a grid enabled biochemical networks simulation environment (2008)
Liu, X., Jiang, J., Ajayi, O., Gu, X., Gilbert, D., Sinnott, R.O.
The simulation of biochemical networks provides insight and understanding about the underlying biochemical processes and pathways used by cells and organisms. BioNessie is a biochemical network...
Nguyen-Viet, H., Bernard, N., Mitchell, E.A.D., Gilbert, D.
Ecotoxicological studies usually focus on single microbial species under controlled conditions. As a result, little is known about the responses of different microbial functional groups or individual...
Nguyen-Viet, H., Bernard, N., Mitchell, E.A.D., Cortet, J., Gilbert, D.
We studied the relationships between testate amoeba communities and heavy metal (Pb, Cd, Zn, Ni, Cu, Mn, and Fe) concentrations in the moss Barbula indica sampled at 29 sites in and around the city...
Gilbert, D, Franjic-Wurtz, C, Funk, K, Gensch, T, Frings, S, Mohrlen, F
Recent research into the generation of hyperalgesia has revealed that both the excitability of peripheral nociceptors and the transmission of their afferent signals in the spinal cord are subject to...
Gilbert, D, Franjic-Wurtz, C, Funk, K, Gensch, T, Frings, S, Mohrlen, F
Recent research into the generation of hyperalgesia has revealed that both the excitability of peripheral nociceptors and the transmission of their afferent signals in the spinal cord are subject to...
Reconciling commercial exploitation of peat with biodiversity in peatland ecosystems. (2006)
Buttler, A., Artz, R.R.E., Campbell, C.D., Laggoun-Defarge, F., Vasander, H., ...
Carbon balance of a european mountain bog at constrasting stages of regeneration (2006)
Bortoluzzi, E.;, Epron, D.;, Siegenthaler, A.;, Gilbert, D.;, Buttler, A.
Reconciling commercial exploitation of peat with biodiversity in peatland ecosystems (2006)
Artz, R.R.E.;, Campbell, C.D.;, Buttler, A.;, Laggoun-Defarge, F.;, Vasander, H.;, ...
Analysis of signalling pathways using continuous time Markov chains (2006)
Calder, M., Vyshemirsky, V., Gilbert, D., Orton, R.
We describe a quantitative modelling and analysis approach for signal transduction networks. We illustrate the approach with an example, the RKIP inhibited ERK pathway [CSK+03]. Our models are high...
We report on the results of an investigation into the integration of Petri nets and ordinary differential equations (ODEs) for the modelling and analysis of biochemical networks, and the application...
Defining reference service life : an open innovation approach (2005)
Cole, I, Trinidad, G, Corrigan, P, Maher, M.L, Liew, P, Gilbert , D, ...
The endeavour to obtain estimates of durability of components for use in lifecycle assessment or costing and infrastructure and maintenance planning systems is large. The factor method and the...
When kinases meet mathematics: the systems biology of MAPK signalling (2005)
Kolch, W., Calder, M., Gilbert, D.
The mitogen activated protein kinase/extracellular signal regulated kinase pathway regulates fundamental cellular function such as cell proliferation, survival, differentiation and motility, raising...
When kinases meet mathematics: the systems biology of MAPK signalling (2005)
Kolch, W., Calder, M., Gilbert, D.
The mitogen activated protein kinase/extracellular signal regulated kinase pathway regulates fundamental cellular function such as cell proliferation, survival, differentiation and motility, raising...
Defining reference service life : an open innovation approach (2005)
Cole, I, Trinidad, G, Corrigan, P, Maher, M.L, Liew, P, Gilbert , D, ...
The endeavour to obtain estimates of durability of components for use in lifecycle assessment or costing and infrastructure and maintenance planning systems is large. The factor method and the...
Defining reference service life : an open innovation approach (2005)
Cole, I, Trinidad, G, Corrigan, P, Maher, M.L, Liew, P, Gilbert , D, ...
The endeavour to obtain estimates of durability of components for use in lifecycle assessment or costing and infrastructure and maintenance planning systems is large. The factor method and the...
Economic and sociological approaches of French peatlands. (2004)
Buttler, A., Maitre, C., Gilbert, D., Epron, D., Laggoun-Defarge, F., Jacques-Jouvenot, D.
Economic and sociological approaches of French peatlands (2004)
Maitre, C.;, Gilbert, D.;, Buttler, A.;, Epron, D.;, Laggoun-Defarge, F.;, Jacques-Jouvenot, D.
Nguyen, H., Gilbert, D., Bernard, N., Mitchell, E.A.D.
To assess the potential use of testate amoebae as biomonitors of atmospheric pollution we studied the relationship between atmospheric nitrogen dioxide (NO2) pollution and testate amoebae density,...
Previous studies have shown the existence of a vertical micro-distribution of testate amoebae in the first centimeters of Sphagnum and their response to nutrient enrichment. In order to test the...
Grid services supporting the usage of secure federated, distributed biomedical data (2004)
Sinnott, R.O., Atkinson, M., Bayer, M., Berry, D., Dominiczak, A., Ferrier, M., ...
The BRIDGES project is a UK e-Science project that provides grid based support for biomedical research into the genetics of hypertension – the Cardiovascular Functional Genomics Project (CFG). Its...
Chapman, S., Buttler, A., Francez, A., Laggoun-Defarge, F., Vasander, H., Schloter, M., ...
Peatlands are ecosystems of exceptional conservation value because of their beauty, biodiversity, importance in global geochemical cycles, and the paleoenvironmental records they preserve. Commercial...
Mitchell, E. A. D., Gilbert, D., Buttler, A., Amblard, C., Grosvernier, P., Gobat, J. M.
Little is known about the structure of microbial communities in Sphagnum peatlands, and the potential effects of the increasing atmospheric CO2 concentration on these communities are not known. We...
Gilbert, D., Mitchell, E.A.D., Amblard, C., Bourdier, G.
Population dynamics and food preferences of the testate amoeba species complex Nebela tincta major-bohemica-collaris (“Nebela collaris sensu lato”) were described from a Sphagnum peatland over...
A Review of the Environmental and Health Effects of Termiticides under Australian Conditions (2003)
Boyd, A., Noller, B. N., White, P, Gilbert, D, Smith, D., Mortimer, P, ...
Thouvenot, A, Gilbert, D, Sime-Ngando, T, Debroas, D
In order to yield some insights into the planktonic food web structure of new reservoirs, size-fractionated biomass and productivity of phytoplankton were examined from 1996 to 1997 (following the...
Environmental effects of currently used termiticides under Australian conditions (2002)
Boyd, A., Brown, M., Connell, D., Cristaldi, C., Cruice, R.C., Francis, I., ...
Environmental effects of currently used termiticides under Australian conditions (2002)
Boyd, A., Brown, M., Connell, D., Cristaldi, C., Cruice, R.C., Francis, I., ...
Mitchell, E. A. D., Borcard, D., Buttler, A. J., Grosvernier, P., Gilbert, D., Gobat, J. M.
The distribution of soil microorganisms is generally believed to be patchy and to reflect habitat heterogeneity. Despite this general rule, the amount of existing data oil species distribution...
Vittecoq, O., Jouen-Beades, F., Krzanowska, K., Bichon-Tauvel, I., Menard, J. F., Daragon, A., ...
Objectives. To evaluate the frequencies of antineutrophil cytoplasmic (ANCA), anticardiolipin (aCLA) and anti‐β2‐glycoprotein 1 antibodies...
The fate of NH4NO3 added to Sphagnum magellanicum carpets at five European mire sites (1999)
Williams, B. L., Buttler, A., Grosvernier, P., Francez, A. J., Gilbert, D., Ilomets, M., ...
Nitrogen additions as NH4NO3 corresponding to 0 (N0), 1 (N1), 3 (N3) and 10 (N10) g N m(-2) yr(-1) were made to Sphagnum magellanicum cores at two-week intervals in situ at four sites across Europe,...
The uncertainty of demand in water supply optimization models (1999)
Guhl, F., Brémond, B., Gilbert, D.
For several years, we have been working on methods of minimizing water production and transport costs in drinking water networks. This paper deals with the demand prediction of water supply and, in...
Optimization of water supply using Successive Linear Programming (1999)
Guhl, F., Brémond, B., Gilbert, D.
For several years we have been building models of water networks optimization. The optimization makes possible to choose commands (valves opening or pumps starting up) to be implemented over 24...
Drinking water demand using an hourly timestep (1998)
Guhl, F., Brémond, B., Gilbert, D.
For minimizing water production and transport costs in drinking water networks, it is necessary to forecast drinking water demand. The authors propose two models using neural networks. The first...
FlyBase: a Drosophila database. The FlyBase consortium (1997)
Gelbart, WM, Crosby, M, Matthews, B, Rindone, WP, Chillemi, J, Russo Twombly, S, ...
The impact of nitrogen deposition on carbon balance in peatland ecosystems. (1996)
Buttler, A., Williams, B.L., Silcock, D., Francez, A-J., Gilbert, D., Grosvernier, P., ...
Microbial activity in Sphagnum magellanicum peat: a comparison between 4 sites in Europe. (1996)
Buttler, A., Francez, A-J., Gilbert, D., Williams, B.L., Silcock, D.J., Vasander, H., ...
Influence of nitrogen deposition on the carbon balance in peatland ecosystems. (1995)
Buttler, A., Silcock, D.J., Williams, B., Francez, A-J., Gilbert, D., Grosvernier, P., ...
Buttler, A., Williams, B.L., Silcock, D.J., Francez, A-J., Gilbert, D.
Final report to the EC on Projet N° EV5V-CT92-0099 and supplementary project ERBCIPDCT 930029
Transformations of inorganic nitrogen deposition in European raised bogs. (1994)
Williams, B.L., Silcock, D.J., Francez, A.J., Gilbert, D., Buttler, A., Grosvernnier, Ph., ...
Gestion optimale en temps réel d'un réseau A.E.P. (1994)
Gilbert, D., Ouassi, A., Perot, M.
This is a presentation of the design of an optimum management tool of an AEP network (drinking water network) (control of pumps and valves), the evolution of the network as a function of topology, on...
Characteristics of African-American college students with HIV/AIDS.
Johnson, E. H., Gilbert, D., Lollis, C.
This article examines the risky sexual behaviors, condom and drug usage, sexually transmitted diseases (STDs), and attitudes of African-American college students with the human immunodeficiency virus...
What is the significance of black-white differences in risky sexual behavior?
Johnson, E. H., Jackson, L. A., Hinkle, Y., Gilbert, D., Hoopwood, T., Lollis, C. M., ...
A sample of African-American and white young adults were classified as having multiple sex partners or one sexual partner. Subjects with multiple sexual partners were more likely to use drugs and...
Black males who always use condoms: their attitudes, knowledge about AIDS, and sexual behavior.
Johnson, E. H., Hinkle, Y., Gilbert, D., Gant, L. M.
One hundred six black males completed a questionnaire concerning attitudes and knowledge about the use of condoms and acquired immunodeficiency syndrome (AIDS). Of the 106 males in the study, 27...
Johnson, E. H., Gant, L., Hinkle, Y. A., Gilbert, D., Willis, C., Hoopwood, T.
This study identified a sample of young African-American men and women classified as having multiple sex partners or one sex partner. Of the 149 men, 71 (47%) were classified as having multiple sex...