Daub Carsten

SDRF2GRAPH – a visualization tool of a spreadsheet-based description of experimental processes (2009)

Kawaji Hideya, Hayashizaki Yoshihide, Daub Carsten

Abstract Background As larger datasets are produced with the development of genome-scale experimental techniques, it has become essential to explicitly describe the meta-data (information describing...

Hidden layers of human small RNAs (2008)

Kawaji Hideya, Nakamura Mari, Takahashi Yukari, Sandelin Albin, Katayama Shintaro, Fukuda Shiro, ...

Abstract Background Small RNA attracts increasing interest based on the discovery of RNA silencing and the rapid progress of our understanding of these phenomena. Although recent studies suggest the...

Employing conservation of co-expression to improve functional inference (2008)

Daub Carsten, Sonnhammer Erik

Abstract Background Observing co-expression between genes suggests that they are functionally coupled. Co-expression of orthologous gene pairs across species may improve function prediction beyond...

Estimating mutual information using B-spline functions – an improved similarity measure for analysing gene expression data (2004)

Daub Carsten, Steuer Ralf, Selbig Joachim, Kloska Sebastian

Abstract Background The information theoretic concept of mutual information provides a general framework to evaluate dependencies between variables. In the context of the clustering of genes with...