Finocchiaro, Giacomo, Mancuso, Francesco Mattia, Cittaro, Davide, Muller, Heiko
Gene expression technology has become a routine application in many laboratories and has provided large amounts of gene expression signatures that have been identified in a variety of cancer types....
Localizing hotspots of antisense transcription (2007)
Finocchiaro, Giacomo, Carro, Maria Stella, Francois, Stephanie, Parise, Paola, DiNinni, Valentina, Muller, Heiko
Analysis of the transcriptome by computational and experimental methods has established that sense–antisense transcriptional units are a common phenomenon. Although the regulatory potential of...
Localizing hotspots of antisense transcription (2007)
Finocchiaro, Giacomo, Carro, Maria Stella, Francois, Stephanie, Parise, Paola, DiNinni, Valentina, Muller, Heiko
Analysis of the transcriptome by computational and experimental methods has established that sense–antisense transcriptional units are a common phenomenon. Although the regulatory potential of...
Localizing hotspots of antisense transcription (2007)
Finocchiaro, Giacomo, Carro, Maria Stella, Francois, Stephanie, Parise, Paola, DiNinni, Valentina, Muller, Heiko
Analysis of the transcriptome by computational and experimental methods has established that sense–antisense transcriptional units are a common phenomenon. Although the regulatory potential of...
Finocchiaro, Giacomo, Mancuso, Francesco, Muller, Heiko
Abstract Background Routine application of gene expression microarray technology is rapidly producing large amounts of data that necessitate new approaches of analysis. The analysis of a specific...
GenePicker: replicate analysis of Affymetrix gene expression microarrays (2004)
Finocchiaro, Giacomo, Parise, Paola, Minardi, Simone P., Alcalay, Myriam, Müller, Heiko
Summary: GenePicker allows efficient analysis of Affymetrix gene expression data performed in replicate, through definition of analysis schemes, data normalization, t-test/ANOVA, Change-Fold...
GenePicker: replicate analysis of Affymetrix gene expression microarrays (2004)
Finocchiaro, Giacomo, Parise, Paola, Minardi, Simone P., Alcalay, Myriam, Müller, Heiko
Summary: GenePicker allows efficient analysis of Affymetrix gene expression data performed in replicate, through definition of analysis schemes, data normalization, t-test/ANOVA, Change-Fold...
GenePicker: replicate analysis of Affymetrix gene expression microarrays (2004)
Finocchiaro, Giacomo, Parise, Paola, Minardi, Simone P., Alcalay, Myriam, Müller, Heiko
Summary: GenePicker allows efficient analysis of Affymetrix gene expression data performed in replicate, through definition of analysis schemes, data normalization, t-test/ANOVA, Change-Fold...
DSMM: a database of simulated molecular motions. Nucleic Acids Res (2003)
Giacomo Finocchiaro, Ting Wang, Rene Hoffmann, Aitor Gonzalez, Rebecca C. Wade
We describe a Database of Simulated Molecular Motions (DSMM). This database is designed to serve as a single searchable site for locating movies and animations from simulations of biomolecules. DSMM...
SPEPlip: the detection of signal peptide and lipoprotein cleavage sites (2003)
Fariselli, Piero, Finocchiaro, Giacomo, Casadio, Rita
Summary: SPEPlip is a neural network-based method, trained and tested on a set of experimentally derived signal peptides from eukaryotes and prokaryotes. SPEPlip identifies the presence of sorting...
Casadio, Rita, Fariselli, Piero, Finocchiaro, Giacomo, Martelli, Pier Luigi
We address the problem of clustering the whole protein content of genomes into three different categories—globular, all-α, and all-β membrane proteins—with the aim of fishing new membrane...
DSMM: a Database of Simulated Molecular Motions (2003)
Finocchiaro, Giacomo, Wang, Ting, Hoffmann, Rene, Gonzalez, Aitor, Wade, Rebecca C.
We describe a Database of Simulated Molecular Motions (DSMM). This database is designed to serve as a single searchable site for locating movies and animations from simulations of biomolecules. DSMM...
Access the most recent version at doi: 10.1110/ps.0223603 References (2002)
Rita Casadio, Piero Fariselli, Giacomo Finocchiaro, Pier Luigi Martelli, Email Alerting, Rita Casadio, ...
Fishing new proteins in the twilight zone of genomes: The test case of outer membrane proteins in Escherichia coli K12, Escherichia coli O157:H7, and other Gram-negative bacteria
DSMM: a Database of Simulated Molecular Motions
Finocchiaro, Giacomo, Wang, Ting, Hoffmann, Rene, Gonzalez, Aitor, Wade, Rebecca C.
We describe a Database of Simulated Molecular Motions (DSMM). This database is designed to serve as a single searchable site for locating movies and animations from simulations of biomolecules. DSMM...
DSMM: a Database of Simulated Molecular Motions
Finocchiaro, Giacomo, Wang, Ting, Hoffmann, Rene, Gonzalez, Aitor, Wade, Rebecca C.
We describe a Database of Simulated Molecular Motions (DSMM). This database is designed to serve as a single searchable site for locating movies and animations from simulations of biomolecules. DSMM...
Localizing hotspots of antisense transcription
Finocchiaro, Giacomo, Carro, Maria Stella, Francois, Stephanie, Parise, Paola, DiNinni, Valentina, Muller, Heiko
Analysis of the transcriptome by computational and experimental methods has established that sense–antisense transcriptional units are a common phenomenon. Although the regulatory potential of...
Finocchiaro, Giacomo, Mancuso, Francesco Mattia, Cittaro, Davide, Muller, Heiko
Gene expression technology has become a routine application in many laboratories and has provided large amounts of gene expression signatures that have been identified in a variety of cancer types....
Casadio, Rita, Fariselli, Piero, Finocchiaro, Giacomo, Martelli, Pier Luigi
We address the problem of clustering the whole protein content of genomes into three different categories—globular, all-α, and all-β membrane proteins—with the aim of fishing new membrane...