ACLAME: A CLAssification of Mobile genetic Elements, update 2010 (2010)
Leplae, Raphaël, Lima-Mendez, Gipsi, Toussaint, Ariane
The ACLAME database is dedicated to the collection, analysis and classification of sequenced mobile genetic elements (MGEs, in particular phages and plasmids). In addition to providing information on...
Reticulate Representation of Evolutionary and Functional Relationships between Phage Genomes (2008)
Lima-Mendez, Gipsi, Van Helden, Jacques, Toussaint, Ariane, Leplae, Raphaël
Bacteriophage genomes show pervasive mosaicism, indicating the importance of horizontal gene exchange in their evolution. Phage genomes represent unique combinations of modules, each of them with a...
Prophinder: a computational tool for prophage prediction in prokaryotic genomes (2008)
Lima-Mendez, Gipsi, Van Helden, Jacques, Toussaint, Ariane, Leplae, Raphaël
Summary: Prophinder is a prophage prediction tool coupled with a prediction database, a web server and web service. Predicted prophages will help to fill the gaps in the current sparse phage sequence...
NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways (2008)
Brohée, Sylvain, Faust, Karoline, Lima-Mendez, Gipsi, Sand, Olivier, Janky, Rekin's, Vanderstocken, Gilles, ...
The network analysis tools (NeAT) (http://rsat.ulb.ac.be/neat/) provide a user-friendly web access to a collection of modular tools for the analysis of networks (graphs) and clusters (e.g. microarray...
NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways
Brohée, Sylvain, Faust, Karoline, Lima-Mendez, Gipsi, Sand, Olivier, Janky, Rekin's, Vanderstocken, Gilles, ...
The network analysis tools (NeAT) (http://rsat.ulb.ac.be/neat/) provide a user-friendly web access to a collection of modular tools for the analysis of networks (graphs) and clusters (e.g. microarray...
ACLAME: A CLAssification of Mobile genetic Elements, update 2010
Leplae, Raphaël, Lima-Mendez, Gipsi, Toussaint, Ariane
The ACLAME database is dedicated to the collection, analysis and classification of sequenced mobile genetic elements (MGEs, in particular phages and plasmids). In addition to providing information on...