Harlow Timothy

Bayesian and maximum likelihood phylogenetic analyses of protein sequence data under relative branch-length differences and model violation (2005)

Mar Jessica, Harlow Timothy, Ragan Mark

Abstract Background Bayesian phylogenetic inference holds promise as an alternative to maximum likelihood, particularly for large molecular-sequence data sets. We have investigated the performance of...

A hybrid clustering approach to recognition of protein families in 114 microbial genomes (2004)

Harlow Timothy, Gogarten J Peter, Ragan Mark

Abstract Background Grouping proteins into sequence-based clusters is a fundamental step in many bioinformatic analyses (e.g., homology-based prediction of structure or function). Standard clustering...