Comparison of sequence-dependent tiling array normalization approaches (2009)
Chung, Ho-Ryun, Vingron, Martin
Abstract Background The detection of enriched DNA or RNA fragments by tiling microarrays has become more and more popular. These microarrays contain a high number of small probes covering genomic...
BIOINFORMATICS doi:10.1093/bioinformatics/btm167 A physical model for tiling array analysis (2008)
Ho-ryun Chung, Dennis Kostka, Martin Vingron
Motivation: Chromatin immunoprecipitation (ChIP) is a powerful experimental approach to identify in vivo binding sites of sequencespecific transcription factors (TFs). These experiments are designed...
Lineage-specific expansion of the Zinc Finger Associated Domain ZAD (2007)
Chung, Ho-Ryun, Löhr, Ulrike, Jäckle, Herbert
The zinc finger associated domain (ZAD), present in almost 100 distinct proteins, characterizes the largest subgroup of C2H2 zinc finger proteins in Drosophila melanogaster and was initially found to...
A physical model for tiling array analysis (2007)
Chung, Ho-Ryun, Kostka, Dennis, Vingron, Martin
Motivation: Chromatin immunoprecipitation (ChIP) is a powerful experimental approach to identify in vivo binding sites of sequence-specific transcription factors (TFs). These experiments are designed...
A physical model for tiling array analysis. (2007)
Chung, Ho-Ryun, Kostka, Dennis, Vingron, Martin
Motivation: Chromatin immunoprecipitation (ChIP) is a powerful experimental approach to identify in vivo binding sites of sequence-specific transcription factors (TFs). These experiments are designed...
ZAD, Zinc Finger Associated Domain Corresponding Autor: (2007)
Ulrike Löhr, Herbert Jäckle, Ho-ryun Chung
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License
Gain-of-Function Screen for Genes That Affect Drosophila Muscle Pattern Formation (2005)
Nicole Staudt, Andreas Molitor, Kalman Somogyi, Juan Mata, Silvia Curado, Karsten Eulenberg, ...
This article reports the production of an EP-element insertion library with more than 3,700 unique target sites within the Drosophila melanogaster genome and its use to systematically identify genes...
Gain-of-Function Screen for Genes That Affect Drosophila Muscle Pattern Formation
Staudt, Nicole, Molitor, Andreas, Somogyi, Kalman, Mata, Juan, Curado, Silvia, Eulenberg, Karsten, ...
This article reports the production of an EP-element insertion library with more than 3,700 unique target sites within the Drosophila melanogaster genome and its use to systematically identify genes...
Hirosawa-Takamori, Mitsuko, Chung, Ho-Ryun, Jäckle, Herbert
Selenoprotein synthesis is conserved from bacteria to man. It involves the differential decoding of the UGA stop codon as selenocysteine. The proteomes of both prokaryotes and eukaryotes, with the...
Genomic expansion and clustering of ZAD-containing C2H2 zinc-finger genes in Drosophila
Chung, Ho-Ryun, Schäfer, Ulrich, Jäckle, Herbert, Böhm, Siegfried
C2H2 zinc-finger proteins (ZFPs) constitute the largest family of nucleic acid binding factors in higher eukaryotes. In silico analysis identified a total of 326 putative ZFP genes in the Drosophila...
Staudt, Nicole, Fellert, Sonja, Chung, Ho-Ryun, Jäckle, Herbert, Vorbrüggen, Gerd
We describe the molecular characterization and function of vielfältig (vfl), a X-chromosomal gene that encodes a nuclear protein with six Krüppel-like C2H2 zinc finger motifs. vfl transcripts are...
Gain-of-Function Screen for Genes That Affect Drosophila Muscle Pattern Formation
Staudt, Nicole, Molitor, Andreas, Somogyi, Kalman, Mata, Juan, Curado, Silvia, Eulenberg, Karsten, ...
This article reports the production of an EP-element insertion library with more than 3,700 unique target sites within the Drosophila melanogaster genome and its use to systematically identify genes...
Hirosawa-Takamori, Mitsuko, Chung, Ho-Ryun, Jäckle, Herbert
Selenoprotein synthesis is conserved from bacteria to man. It involves the differential decoding of the UGA stop codon as selenocysteine. The proteomes of both prokaryotes and eukaryotes, with the...
Genomic expansion and clustering of ZAD-containing C2H2 zinc-finger genes in Drosophila
Chung, Ho-Ryun, Schäfer, Ulrich, Jäckle, Herbert, Böhm, Siegfried
C2H2 zinc-finger proteins (ZFPs) constitute the largest family of nucleic acid binding factors in higher eukaryotes. In silico analysis identified a total of 326 putative ZFP genes in the Drosophila...
Staudt, Nicole, Fellert, Sonja, Chung, Ho-Ryun, Jäckle, Herbert, Vorbrüggen, Gerd
We describe the molecular characterization and function of vielfältig (vfl), a X-chromosomal gene that encodes a nuclear protein with six Krüppel-like C2H2 zinc finger motifs. vfl transcripts are...