J. C. Setubal

\Lambda \Theta \Gamma \Delta \Lambda \Theta \Gamma \Delta \Lambda \Theta \Gamma \Delta \Lambda \Theta \Gamma \Delta \Lambda \Theta \Gamma \Delta \Lambda \Theta \Gamma \Delta \Lambda \Theta \Gamma \Delta \Lambda \Theta \Gamma \Delta \Lambda \Theta \Gamma \ (2008)

Estadual De Campinas, C. B. Medeiros, J. C. Setubal, Luciano Antonio, Claudia Bauzer Medeiros

A framework based on semantic Web services and AI planning for the management of bioinformatics scientio/c workAEows L.A. Digiampietri J.J. Pe'rez-Alca'zar

A versatile computational pipeline for bacterial genome annotation improvement and comparative analysis, with Brucella as a use case (2007)

Yu, G.X., Snyder, E.E., Boyle, S.M., Crasta, O.R., Czar, M., Mane, S.P., ...

We present a bacterial genome computational analysis pipeline, called GenVar. The pipeline, based on the program GeneWise, is designed to analyze an annotated genome and automatically identify missed...

PATRIC: The VBI PathoSystems Resource Integration Center (2007)

Snyder, E. E., Kampanya, N., Lu, J., Nordberg, E. K., Karur, H. R., Shukla, M., ...

The PathoSystems Resource Integration Center (PATRIC) is one of eight Bioinformatics Resource Centers (BRCs) funded by the National Institute of Allergy and Infection Diseases (NIAID) to create a...

PATRIC: The VBI PathoSystems Resource Integration Center (2006)

Snyder, E. E., Kampanya, N., Lu, J., Nordberg, E. K., Karur, H. R., Shukla, M., ...

The PathoSystems Resource Integration Center (PATRIC) is one of eight Bioinformatics Resource Centers (BRCs) funded by the National Institute of Allergy and Infection Diseases (NIAID) to create a...

PATRIC: The VBI PathoSystems Resource Integration Center (2006)

Snyder, E. E., Kampanya, N., Lu, J., Nordberg, E. K., Karur, H. R., Shukla, M., ...

The PathoSystems Resource Integration Center (PATRIC) is one of eight Bioinformatics Resource Centers (BRCs) funded by the National Institute of Allergy and Infection Diseases (NIAID) to create a...

PATRIC: The VBI PathoSystems Resource Integration Center (2006)

Snyder, E. E., Kampanya, N., Lu, J., Nordberg, E. K., Karur, H. R., Shukla, M., ...

The PathoSystems Resource Integration Center (PATRIC) is one of eight Bioinformatics Resource Centers (BRCs) funded by the National Institute of Allergy and Infection Diseases (NIAID) to create a...

PATRIC: The VBI PathoSystems Resource Integration Center (2006)

Snyder, E. E., Kampanya, N., Lu, J., Nordberg, E. K., Karur, H. R., Shukla, M., ...

The PathoSystems Resource Integration Center (PATRIC) is one of eight Bioinformatics Resource Centers (BRCs) funded by the National Institute of Allergy and Infection Diseases (NIAID) to create a...

Genome features of Leptospira interrogans serovar Copenhageni (2004)

Verjovski-Almeida,S., Van Sluys,M.A., Monteiro-Vitorello,C.B., Camargo,L.E.A., Digiampietri,L.A., ...

We report novel features of the genome sequence of Leptospira interrogans serovar Copenhageni, a highly invasive spirochete. Leptospira species colonize a significant proportion of rodent populations...

Transcriptome analysis of the acoelomate human parasite Schistosoma mansoni (2003)

Verjovski-Almeida, S., DeMarco, R., Martins, E.A.L., Guimarães, P.E.M., Ojopi, E.P.B., Paquola, A.C.M., ...

Schistosoma mansoni is the primary causative agent of schistosomiasis, which affects 200 million individuals in 74 countries. We generated 163,000 expressed-sequence tags (ESTs) from normalized cDNA...

Augment or Push? A computational study of Bipartite Matching and Unit Capacity Flow Algorithms (1997)

Boris V. Cherkassky, Andrew V. Goldberg, Paul Martin, J.C. Setubal, Jo~ao C. Setubal, Jorge Stolfi

We conduct a computational study of unit capacity flow and bipartite matching algorithms. Our goal is to determine which variant of the push-relabel method is most efficient in practice and to...

Comparative Analyses of the Complete Genome Sequences of Pierce's Disease and Citrus Variegated Chlorosis Strains of Xylella fastidiosa

Van Sluys, M. A., De Oliveira, M. C., Monteiro-Vitorello, C. B., Miyaki, C. Y., Furlan, L. R., Camargo, L. E. A., ...

Xylella fastidiosa is a xylem-dwelling, insect-transmitted, gamma-proteobacterium that causes diseases in many plants, including grapevine, citrus, periwinkle, almond, oleander, and coffee. X....

Comparative Genomics of Two Leptospira interrogans Serovars Reveals Novel Insights into Physiology and Pathogenesis†

Ko, A. I., Martins, E. A. L., Monteiro-Vitorello, C. B., Ho, P. L., Haake, D. A., ...

Leptospira species colonize a significant proportion of rodent populations worldwide and produce life-threatening infections in accidental hosts, including humans. Complete genome sequencing of...

Comparative Analyses of the Complete Genome Sequences of Pierce's Disease and Citrus Variegated Chlorosis Strains of Xylella fastidiosa

Van Sluys, M. A., De Oliveira, M. C., Monteiro-Vitorello, C. B., Miyaki, C. Y., Furlan, L. R., Camargo, L. E. A., ...

Xylella fastidiosa is a xylem-dwelling, insect-transmitted, gamma-proteobacterium that causes diseases in many plants, including grapevine, citrus, periwinkle, almond, oleander, and coffee. X....

Comparative Genomics of Two Leptospira interrogans Serovars Reveals Novel Insights into Physiology and Pathogenesis†

Ko, A. I., Martins, E. A. L., Monteiro-Vitorello, C. B., Ho, P. L., Haake, D. A., ...

Leptospira species colonize a significant proportion of rodent populations worldwide and produce life-threatening infections in accidental hosts, including humans. Complete genome sequencing of...

PATRIC: The VBI PathoSystems Resource Integration Center

Snyder, E. E., Kampanya, N., Lu, J., Nordberg, E. K., Karur, H. R., Shukla, M., ...

The PathoSystems Resource Integration Center (PATRIC) is one of eight Bioinformatics Resource Centers (BRCs) funded by the National Institute of Allergy and Infection Diseases (NIAID) to create a...

A versatile computational pipeline for bacterial genome annotation improvement and comparative analysis, with Brucella as a use case

Yu, G.X., Snyder, E.E., Boyle, S.M., Crasta, O.R., Czar, M., Mane, S.P., ...

We present a bacterial genome computational analysis pipeline, called GenVar. The pipeline, based on the program GeneWise, is designed to analyze an annotated genome and automatically identify missed...