Integrating sequence, evolution and functional genomics in regulatory genomics (2009)
Vingron, Martin, Brazma, Alvis, Coulson, Richard, Van Helden, Jacques, Manke, Thomas, Palin, Kimmo, ...
Abstract With genome analysis expanding from the study of genes to the study of gene regulation, 'regulatory genomics' utilizes sequence information, evolution and functional genomics measurements to...
A Minimum Encoding Approach to Document Clustering (2007)
Kimmo Palin, Janne Pasanen, Teemu Roos
The aim of clustering is sometimes to allow a compact yet informative description of a database of a large number of objects (customers, documents, etc.). Based on this observation, we argue that in...
From Gene Networks to Gene Function (2003)
Schlitt, Thomas, Palin, Kimmo, Rung, Johan, Dietmann, Sabine, Lappe, Michael, Ukkonen, Esko, ...
We propose a novel method to identify functionally related genes based on comparisons of neighborhoods in gene networks. This method does not rely on gene sequence or protein structure homologies,...
Pages S172–S180 Correlating gene promoters and expression in gene disruption experiments (2002)
Kimmo Palin, Esko Ukkonen, Alvis Brazma, Jaak Vilo
Motivation: Finding putative transcription factor binding sites in the upstream sequences of similarly expressed genes has recently become a subject of intensive studies. In this paper we investigate...
Correlating gene promoters and expression in gene disruption experiments (2002)
Palin, Kimmo, Ukkonen, Esko, Brazma, Alvis, Vilo, Jaak
Motivation: Finding putative transcription factor binding sites in the upstream sequences of similarly expressed genes has recently become a subject of intensive studies. In this paper we investigate...
From Gene Networks to Gene Function
Schlitt, Thomas, Palin, Kimmo, Rung, Johan, Dietmann, Sabine, Lappe, Michael, Ukkonen, Esko, ...
We propose a novel method to identify functionally related genes based on comparisons of neighborhoods in gene networks. This method does not rely on gene sequence or protein structure homologies,...
From Gene Networks to Gene Function
Schlitt, Thomas, Palin, Kimmo, Rung, Johan, Dietmann, Sabine, Lappe, Michael, Ukkonen, Esko, ...
We propose a novel method to identify functionally related genes based on comparisons of neighborhoods in gene networks. This method does not rely on gene sequence or protein structure homologies,...
Integrating sequence, evolution and functional genomics in regulatory genomics
Vingron, Martin, Brazma, Alvis, Coulson, Richard, Van Helden, Jacques, Manke, Thomas, Palin, Kimmo, ...
Finding transcription factor binding sites in regulatory regions of the genome