The genome of black cottonwood, Populus trichocarpa (Torr. & Gray) (2006)
Tuskan, G.A., DiFazio, S., Jansson, S., Bohlmann, J., Grigoriev, I., Hellsten, U., ...
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray) (2006)
TUSKAN, GA, DIFAZIO, S, JANSSON, S, BOHLMANN, J, GRIGORIEV, I, HELLSTEN, U, ...
A database designed to computationally aid an experimental approach to alternative splicing (2004)
C. L. Zheng, C. L. Zheng, T. M. Nair, T. M. Nair, M. Gribskov, M. Gribskov, ...
A unique microarray approach has been developed to profile alternative splicing in the cell. To support the development of this approach, we have developed the Manually Annotated Alternatively...
The PlantsP and PlantsT functional Genomics Databases (2003)
Tchieu, JH, Fana, F, Fink, JL, Harper, J, Nair, TM, Niedner, RH, ...
PlantsP and PlantsT allow users to quickly gain a global understanding of plant phosphoproteins and plant membrane transporters, respectively, from evolutionary relationships to biochemical function...
Nair, TM, Zheng, CL, Fink, JL, Stuart, RO, Gribskov, M
DNA arrays have become the immediate choice in the analysis of large-scale expression measurements. Understanding the expression pattern of genes provide functional information on newly identified...
The PlantsP and PlantsT functional Genomics Databases (2003)
Tchieu, J. H., Fana, F., Fink, J. L., Harper, J., Nair, T. M., Niedner, R. H., ...
PlantsP and PlantsT allow users to quickly gain a global understanding of plant phosphoproteins and plant membrane transporters, respectively, from evolutionary relationships to biochemical function...
Nair, T. M., Zheng, C. L., Fink, J. L., Stuart, R. O., Gribskov, M.
DNA arrays have become the immediate choice in the analysis of large-scale expression measurements. Understanding the expression pattern of genes provide functional information on newly identified...
Estimating and evaluating the statistics of gapped local-alignment scores (2002)
We present a novel maximum-likelihood-based algorithm for estimating the distribution of alignment scores from the scores of unrelated sequences in a database search. Using a new method for measuring...
Estimating and evaluating the statistics of gapped local-alignment scores (2002)
We present a novel maximum-likelihood-based algorithm for estimating the distribution of alignment scores from the scores of unrelated sequences in a database search. Using a new method for measuring...
Use of keyword hierarchies to interpret gene expression patterns (2001)
Masys, DR, Welsh, JB, Fink, JL, Gribskov, M, Klacansky, I, Corbeil, J
Motivation: High-density microarray technology permits the quantitative and simultaneous monitoring of thousands of genes. The interpretation challenge is to extract relevant information from this...
Use of keyword hierarchies to interpret gene expression patterns (2001)
Masys, D. R., Welsh, J. B., Fink, J. L., Gribskov, M., Klacansky, I., Corbeil, J.
Motivation: High-density microarray technology permits the quantitative and simultaneous monitoring of thousands of genes. The interpretation challenge is to extract relevant information from this...
A prototype molecular interactive collaborative environment (1998)
P. Bourne, M. Gribskov, G. Johnson, J. Moreland, S. Wavra, H. Weissig
Illustrations of macromolecular structure in the scientific literature contain a high level of semantic content through which the authors convey, among other features, the biological function of that...
A prototype molecular interactive collaborative environment (1998)
P. Bourne, M. Gribskov, G. Johnson, J. Moreland, S. Wavra, H. Weissig
Illustrations of macromolecular structure in the scientific literature contain a high level of semantic content through which the authors convey, among other features, the biological function of that...
Profile analysis: detection of distantly related proteins.
Gribskov, M, McLachlan, A D, Eisenberg, D
Profile analysis is a method for detecting distantly related proteins by sequence comparison. The basis for comparison is not only the customary Dayhoff mutational-distance matrix but also the...
Sigma factors from E. coli, B. subtilis, phage SP01, and phage T4 are homologous proteins.
We show, using dot matrix comparisons and statistical analysis of sequence alignments, that seven sequenced sigma factors, E. coli sigma-70 and sigma-32, B. subtilis sigma-43 and sigma-29, phage SP01...
Gribskov, M, Devereux, J, Burgess, R R
The codon preference plot is useful for locating genes in sequenced DNA, predicting the relative level of their expression and for detecting DNA sequencing errors resulting in the insertion or...
Gribskov, M, Burgess, R R, Devereux, J
We describe a program for the analysis of protein secondary structure that operates with the Sequence Analysis Software Package of the University of Wisconsin Genetics Computer Group (UWGCG). The...
Mullen, J R, Kayne, P S, Moerschell, R P, Tsunasawa, S, Gribskov, M, Colavito-Shepanski, M, ...
A gene from Saccharomyces cerevisiae has been mapped, cloned, sequenced and shown to encode a catalytic subunit of an N-terminal acetyltransferase. Regions of this gene, NAT1, and the chloramphenicol...
Profile analysis: detection of distantly related proteins.
Gribskov, M, McLachlan, A D, Eisenberg, D
Profile analysis is a method for detecting distantly related proteins by sequence comparison. The basis for comparison is not only the customary Dayhoff mutational-distance matrix but also the...
Sigma factors from E. coli, B. subtilis, phage SP01, and phage T4 are homologous proteins.
We show, using dot matrix comparisons and statistical analysis of sequence alignments, that seven sequenced sigma factors, E. coli sigma-70 and sigma-32, B. subtilis sigma-43 and sigma-29, phage SP01...
Gribskov, M, Devereux, J, Burgess, R R
The codon preference plot is useful for locating genes in sequenced DNA, predicting the relative level of their expression and for detecting DNA sequencing errors resulting in the insertion or...
Gribskov, M, Burgess, R R, Devereux, J
We describe a program for the analysis of protein secondary structure that operates with the Sequence Analysis Software Package of the University of Wisconsin Genetics Computer Group (UWGCG). The...
Mullen, J R, Kayne, P S, Moerschell, R P, Tsunasawa, S, Gribskov, M, Colavito-Shepanski, M, ...
A gene from Saccharomyces cerevisiae has been mapped, cloned, sequenced and shown to encode a catalytic subunit of an N-terminal acetyltransferase. Regions of this gene, NAT1, and the chloramphenicol...