A BAC clone fingerprinting approach to the detection of human genome rearrangements (2007)
Krzywinski, Martin, Bosdet, Ian, Mathewson, Carrie, Wye, Natasja, Brebner, Jay, Chiu, Readman, ...
Abstract We present a method, called fingerprint profiling (FPP), that uses restriction digest fingerprints of bacterial artificial chromosome clones to detect and classify rearrangements in the...
Stratford, Anna L, Habibi, Golareh, Astanehe, Arezoo, Jiang, Helen, Hu, Kaiji, Park, Eugene, ...
Abstract Introduction Basal-like breast cancers (BLBCs) are very aggressive, and present serious clinical challenges as there are currently no targeted therapies available. We determined the...
A physical map of the bovine genome (2007)
Chiu, Readman, Schein, Jacqueline, Hobbs, Matthew, Abbey, Colette, Adelson, David, ...
ABSTRACT: BACKGROUND: Cattle are important agriculturally and relevant as a model organism. Previously described genetic and radiation hybrid (RH) maps of the bovine genome have been used to identify...
DiscoverySpace: an interactive data analysis application (2007)
Robertson, Neil, Oveisi-Fordorei, Mehrdad, Zuyderduyn, Scott D, Varhol, Richard J, Fjell, Christopher, Marra, Marco, ...
Abstract DiscoverySpace is a graphical application for bioinformatics data analysis. Users can seamlessly traverse references between biological databases and draw together annotations in an...
Julie M. Kneller, Thomas Ehlen, Jasenka P. Matisic, Dianne Miller, Dirk Van Niekerk, Wan L. Lam, ...
Sixteen longSAGE libraries from four different clinical stages of cervical intraepithelial neoplasia have enabled us to identify novel cell-surface biomarkers indicative of CIN stage. By comparing...
2007 Robertson et Volume al. 8, Issue 1, Article R6 Open Access (2007)
Neil Robertson, Mehrdad Oveisi-fordorei, Scott D Zuyderduyn, Richard J Varhol, Christopher Fjell, Marco Marra, ...
Software DiscoverySpace: an interactive data analysis application
Chen, Nansheng, Mah, Allan, Blacque, Oliver E, Chu, Jeffrey, Phgora, Kiran, Bakhoum, Mathieu W, ...
Abstract Background The recent availability of genome sequences of multiple related Caenorhabditis species has made it possible to identify, using comparative genomics, similarly transcribed genes in...
Generation, annotation, analysis and database integration of 16,500 white spruce EST clusters (2005)
Pavy, Nathalie, Paule, Charles, Parsons, Lee, Crow, John A, Morency, Marie-Josee, Cooke, Janice, ...
Abstract Background The sequencing and analysis of ESTs is for now the only practical approach for large-scale gene discovery and annotation in conifers because their very large genomes are unlikely...
Integrated and sequence-ordered BAC and YAC-based physical maps for the rat genome (2004)
Krzywinski,Martin, Wallis,John, Goesele,Claudia, Bosdet,Ian, Chiu,Readman, Graves,Tina, ...
As part of the effort to sequence the genome of Rattus norvegicus, we constructed a physical map comprised of fingerprinted bacterial artificial chromosome (BAC) clones from the CHORI-230 BAC...
Integrated and sequence-ordered BAC and YAC-based physical maps for the rat genome (2004)
Krzywinski,Martin, Wallis,John, Goesele,Claaudia, Bosdet,Ian, Chiu,Readman, Graves,Tina, ...
As part of the effort to sequence the genome of Rattus norvegicus, we constructed a physical map comprised of fingerprinted bacterial artificial chromosome (BAC) clones from the CHORI-230 BAC...
Integrated and sequence-ordered BAC and YAC-based physical maps for the rat genome (2004)
Krzywinski, Martin, Wallis, John, Goesele, Claaudia, Bosdet, Ian, Chiu, Readman, Graves, Tina, ...
As part of the effort to sequence the genome of Rattus norvegicus, we constructed a physical map comprised of fingerprinted bacterial artificial chromosome (BAC) clones from the CHORI-230 BAC...
Integrated and sequence-ordered BAC and YAC-based physical maps for the rat genome (2004)
Krzywinski, Martin, Wallis, John, Goesele, Claudia, Bosdet, Ian, Chiu, Readman, Graves, Tina, ...
As part of the effort to sequence the genome of Rattus norvegicus, we constructed a physical map comprised of fingerprinted bacterial artificial chromosome (BAC) clones from the CHORI-230 BAC...
Integrated and Sequence-Ordered BAC- and YAC-Based Physical Maps for the Rat Genome (2004)
Krzywinski, Martin, Wallis, John, Gösele, Claudia, Bosdet, Ian, Chiu, Readman, Graves, Tina, ...
As part of the effort to sequence the genome of Rattus norvegicus, we constructed a physical map comprised of fingerprinted bacterial artificial chromosome (BAC) clones from the CHORI-230 BAC...
Temperature-Regulated Transcription in the Pathogenic Fungus Cryptococcus neoformans (2002)
Steen, Barbara R., Lian, Tian, Zuyderduyn, Scott, MacDonald, William Kim, Marra, Marco, Jones, Steven J.M., ...
Ajioka, James W., Boothroyd, John C., Brunk, Brian P., Hehl, Adrian, Hillier, Ledeana, Manger, Ian D., ...
Manger, Ian D., Hehl, Adrian, Parmley, Steve, Sibley, L. David, Marra, Marco, Hillier, Ladeana, ...
Toxoplasma gondii is a protozoan parasite responsible for widespread infections in humans and animals. Two major asexual forms are produced during the life cycle of this parasite: the rapidly...
Temperature-Regulated Transcription in the Pathogenic Fungus Cryptococcus neoformans
Steen, Barbara R., Lian, Tian, Zuyderduyn, Scott, MacDonald, William Kim, Marra, Marco, Jones, Steven J.M., ...
The basidiomycete fungus Cryptococcus neoformans is an opportunistic pathogen of worldwide importance that causes meningitis, leading to death in immunocompromised individuals. Unlike many...
Integrated and Sequence-Ordered BAC- and YAC-Based Physical Maps for the Rat Genome
Krzywinski, Martin, Wallis, John, Gösele, Claudia, Bosdet, Ian, Chiu, Readman, Graves, Tina, ...
As part of the effort to sequence the genome of Rattus norvegicus, we constructed a physical map comprised of fingerprinted bacterial artificial chromosome (BAC) clones from the CHORI-230 BAC...
Generation, annotation, analysis and database integration of 16,500 white spruce EST clusters
Pavy, Nathalie, Paule, Charles, Parsons, Lee, Crow, John A, Morency, Marie-Josee, Cooke, Janice, ...
Larraya, Luis M., Boyce, Kylie J., So, Austin, Steen, Barbara R., Jones, Steven, Marra, Marco, ...
The switch from budding to filamentous growth is a key aspect of invasive growth and virulence for the fungal phytopathogen Ustilago maydis. The cyclic AMP (cAMP) signaling pathway regulates...
The Genome of the Kinetoplastid Parasite, Leishmania major
Ivens, Alasdair C., Peacock, Christopher S., Worthey, Elizabeth A., Murphy, Lee, Aggarwal, Gautam, Berriman, Matthew, ...
Manger, Ian D., Hehl, Adrian, Parmley, Steve, Sibley, L. David, Marra, Marco, Hillier, Ladeana, ...
Toxoplasma gondii is a protozoan parasite responsible for widespread infections in humans and animals. Two major asexual forms are produced during the life cycle of this parasite: the rapidly...
Temperature-Regulated Transcription in the Pathogenic Fungus Cryptococcus neoformans
Steen, Barbara R., Lian, Tian, Zuyderduyn, Scott, MacDonald, William Kim, Marra, Marco, Jones, Steven J.M., ...
The basidiomycete fungus Cryptococcus neoformans is an opportunistic pathogen of worldwide importance that causes meningitis, leading to death in immunocompromised individuals. Unlike many...
Integrated and Sequence-Ordered BAC- and YAC-Based Physical Maps for the Rat Genome
Krzywinski, Martin, Wallis, John, Gösele, Claudia, Bosdet, Ian, Chiu, Readman, Graves, Tina, ...
As part of the effort to sequence the genome of Rattus norvegicus, we constructed a physical map comprised of fingerprinted bacterial artificial chromosome (BAC) clones from the CHORI-230 BAC...
Generation, annotation, analysis and database integration of 16,500 white spruce EST clusters
Pavy, Nathalie, Paule, Charles, Parsons, Lee, Crow, John A, Morency, Marie-Josee, Cooke, Janice, ...
Larraya, Luis M., Boyce, Kylie J., So, Austin, Steen, Barbara R., Jones, Steven, Marra, Marco, ...
The switch from budding to filamentous growth is a key aspect of invasive growth and virulence for the fungal phytopathogen Ustilago maydis. The cyclic AMP (cAMP) signaling pathway regulates...
Chen, Nansheng, Mah, Allan, Blacque, Oliver E, Chu, Jeffrey, Phgora, Kiran, Bakhoum, Mathieu W, ...
Comparative genomic analysis of three nematode species identifies 93 genes that encode putative components of the ciliated neurons in C. elegans and are subject to the same regulatory control.
DiscoverySpace: an interactive data analysis application
Robertson, Neil, Oveisi-Fordorei, Mehrdad, Zuyderduyn, Scott D, Varhol, Richard J, Fjell, Christopher, Marra, Marco, ...
DiscoverySpace, a graphical application for bioinformatics data analysis, in particular analysis of SAGE data, is described
A BAC clone fingerprinting approach to the detection of human genome rearrangements
Krzywinski, Martin, Bosdet, Ian, Mathewson, Carrie, Wye, Natasja, Brebner, Jay, Chiu, Readman, ...
Fingerprint Profiling (FPP) is a new method which uses restriction digest fingerprints of bacterial artificial chromosome (BAC) clones for detecting and classifying rearrangements in the human genome.
High-resolution profiling and discovery of planarian small RNAs
Friedländer, Marc R., Adamidi, Catherine, Han, Ting, Lebedeva, Svetlana, Isenbarger, Thomas A., Hirst, Martin, ...
Freshwater planarian flatworms possess uncanny regenerative capacities mediated by abundant and collectively totipotent adult stem cells. Key functions of these cells during regeneration and tissue...
Kneller, Julie M., Ehlen, Thomas, Matisic, Jasenka P., Miller, Dianne, Van Niekerk, Dirk, Lam, Wan L., ...
Sixteen longSAGE libraries from four different clinical stages of cervical intraepithelial neoplasia have enabled us to identify novel cell-surface biomarkers indicative of CIN stage. By comparing...