Fogel G: Prediction of R5, X4, and R5X4 HIV-1 coreceptor usage with evolved neural networks (2009)
Susanna L. Lamers, Marco Salemi, Michael S. Mcgrath, Gary B. Fogel
Abstract—The HIV-1 genome is highly heterogeneous. This variation affords the virus a wide range of molecular properties, including the ability to infect cell types, such as macrophages and...
Switzer, William M, Salemi, Marco, Qari, Shoukat H, Jia, Hongwei, Gray, Rebecca R, Katzourakis, Aris, ...
Abstract Background Human T-lymphotropic virus type 4 (HTLV-4) is a new deltaretrovirus recently identified in a primate hunter in Cameroon. Limited sequence analysis previously showed that HTLV-4...
Genetic Analysis of HIV in AIDS Malignancies (2005)
McGrath, Michael, Salemi, Marco, Lamers, Susanna
No abstract available.
Salemi, Marco, Gordon, Michelle, Van Rensburg, Estrelita Janse, Engelbrecht, Susan, ...
A safe and effective HIV-1 vaccine is urgently needed to control the worldwide AIDS epidemic. Traditional methods of vaccine development have been frustratingly slow, and it is becoming increasingly...
Lamers, Susanna, Beason, Scott, Dunlap, Luke, Compton, Robert, Salemi, Marco
Background: Human Immunodeficiency Virus (HIV) research involves ongoing, repetitious sequencing of the HIV genome and the massive accumulation of associated investigational data. As a result, the...
Lamers, Susanna, Beason, Scott, Dunlap, Luke, Compton, Robert, Salemi, Marco
Background: Human immunodeficiency virus (HIV) research involves ongoing, repetitious sequencing of the HIV genome and the massive accumulation of associated investigational data. As a result, the...
Lamers, Susanna, Beason, Scott, Dunlap, Luke, Compton, Robert, Salemi, Marco
Background: Human Immunodeficiency Virus (HIV) research involves ongoing, repetitious sequencing of the HIV genome and the massive accumulation of associated investigational data. As a result, the...
Salemi, Marco, Wang, Bin, Duffy, Margaret, Hall, William H, Saksena, Nitin K, ...
The site stripping for clock detection procedure was implemented in the recently developed maximum likelihood framework for estimating evolutionary rates and divergence times in measurably evolving...
Pybus, Oliver G, Jaffe, Harold W, Youngpairoj, Ae S, Brown, Teresa M, ...
Human immunodeficiency virus (HIV) type 1 subtype B sequences (whole envelope and the p17 region of gag) were obtained from peripheral blood mononuclear cell samples collected in 1981 from seven...
Shindo, Nice, Salemi, Marco, Costa, Maria C R, Kashima, Simone, ...
In Brazil, HTLV-2 has been detected in blood donors, in intravenous drug users (IDUs) from urban areas, and in Amerindians living in the Amazon basin. Of the three main HTLV-2 subtypes (2a, 2b, and...
Tracing the origin and history of the HIV-2 epidemic (2003)
Pybus, Oliver G, Wang, Bin, Saksena, Nitin K, Salemi, Marco
In this study we date the introduction of HIV-2 into the human population and estimate the epidemic history of HIV-2 subtype A in Guinea-Bissau, the putative geographic origin of HIV-2. The...
Mosaic Genomes of the Six Major Primate Lentivirus Lineages Revealed by Phylogenetic Analyses (2002)
Marco Salemi, Tulio De Oliveira, Valerie Courgnaud, Vincent Moulton, Barbara Holl, Sharon Cassol, ...
To clarify the origin and evolution of the primate lentiviruses (PLVs), which include human immunodeficiency virus types 1 and 2 as well as their simian relatives, simian immunodeficiency viruses...
Van Dooren, Sonia; U0022891, Salemi, Marco; U0008167, Pourrut, Xavier, Peeters, Martine, Delaporte, Eric, Van Ranst, Marc; U0015875, ...
Salemi, Marco; U0008167, Strimmer, K, Hall, W W, Duffy, Maria; U0035072, Delaporte, E, Mboup, S, ...
Attempts to estimate the time of origin of human immunodeficiency virus (HIV)-1 by using phylogenetic analysis are seriously flawed because of the unequal evolutionary rates among different viral...
Salemi, Marco, Lewis, Martha, Egan, John Fergal, Hall, William W., Desmyter, Jan, Vandamme, Anne-Mieke
The phylogeny of human T cell lymphotropic virus type II (HTLV-II) was investigated by using strains isolated from Amerindian and Pygmy tribes, in which the virus is maintained primarily through...
Vandamme, Anne-Mieke, Salemi, Marco, Van Brussel, Marianne, Liu, Hsin-Fu, Van Laethem, Kristel, Van Ranst, Marc, ...
We identified a potential new subtype within human T-cell lymphotropic virus type 2 (HTLV-2), HTLV-2d, present in members of an isolated Efe Bambuti Pygmy tribe. Two of 23 Efe Pygmies were HTLV-2...
Allain, Jean-Pierre, Dong, Yan, Vandamme, Anne-Mieke, Moulton, Vincent, Salemi, Marco
Six donor-recipient clusters of hepatitis C virus (HCV)-infected individuals were studied. For five clusters the period of infection of the donor could be estimated, and for all six clusters the time...
Van Dooren, Sonia, Salemi, Marco, Pourrut, Xavier, Peeters, Martine, Delaporte, Eric, Van Ranst, Marc, ...
Tracing the origin and history of the HIV-2 epidemic
Lemey, Philippe, Pybus, Oliver G., Wang, Bin, Saksena, Nitin K., Salemi, Marco, Vandamme, Anne-Mieke
In this study we date the introduction of HIV-2 into the human population and estimate the epidemic history of HIV-2 subtype A in Guinea-Bissau, the putative geographic origin of HIV-2. The...
Mosaic Genomes of the Six Major Primate Lentivirus Lineages Revealed by Phylogenetic Analyses
Salemi, Marco, De Oliveira, Tulio, Courgnaud, Valerie, Moulton, Vincent, Holland, Barbara, Cassol, Sharon, ...
To clarify the origin and evolution of the primate lentiviruses (PLVs), which include human immunodeficiency virus types 1 and 2 as well as their simian relatives, simian immunodeficiency viruses...
Salemi, Marco, Fitch, Walter M., Ciccozzi, Massimo, Ruiz-Alvarez, Maria Jose, Rezza, Giovanni, Lewis, Martha J.
Salemi, Marco, Lamers, Susanna L., Yu, Stephanie, De Oliveira, T., Fitch, Walter M., McGrath, Michael S.
“Phylodynamic” analysis combines various statistical procedures that can be used to correlate the epidemiological and evolutionary behavior of viral pathogens with the immune system of the host....
Robbins, Kenneth E., Lemey, Philippe, Pybus, Oliver G., Jaffe, Harold W., Youngpairoj, Ae S., Brown, Teresa M., ...
Human immunodeficiency virus (HIV) type 1 subtype B sequences (whole envelope and the p17 region of gag) were obtained from peripheral blood mononuclear cell samples collected in 1981 from seven...
Courgnaud, Valérie, Salemi, Marco, Pourrut, Xavier, Mpoudi-Ngole, Eitel, Abela, Bernadette, Auzel, Philippe, ...
In the present study, we describe a new simian immunodeficiency virus (SIV), designated SIVgsn, naturally infecting greater spot-nosed monkeys (Cercopithecus nictitans) in Cameroon. Together with...
De Oliveira, Tulio, Salemi, Marco, Gordon, Michelle, Vandamme, Anne-Mieke, Van Rensburg, Estrelita Janse, Engelbrecht, Susan, ...
A safe and effective HIV-1 vaccine is urgently needed to control the worldwide AIDS epidemic. Traditional methods of vaccine development have been frustratingly slow, and it is becoming increasingly...
Salemi, Marco, Lewis, Martha, Egan, John Fergal, Hall, William W., Desmyter, Jan, Vandamme, Anne-Mieke
The phylogeny of human T cell lymphotropic virus type II (HTLV-II) was investigated by using strains isolated from Amerindian and Pygmy tribes, in which the virus is maintained primarily through...
Vandamme, Anne-Mieke, Salemi, Marco, Van Brussel, Marianne, Liu, Hsin-Fu, Van Laethem, Kristel, Van Ranst, Marc, ...
We identified a potential new subtype within human T-cell lymphotropic virus type 2 (HTLV-2), HTLV-2d, present in members of an isolated Efe Bambuti Pygmy tribe. Two of 23 Efe Pygmies were HTLV-2...
Allain, Jean-Pierre, Dong, Yan, Vandamme, Anne-Mieke, Moulton, Vincent, Salemi, Marco
Six donor-recipient clusters of hepatitis C virus (HCV)-infected individuals were studied. For five clusters the period of infection of the donor could be estimated, and for all six clusters the time...
Van Dooren, Sonia, Salemi, Marco, Pourrut, Xavier, Peeters, Martine, Delaporte, Eric, Van Ranst, Marc, ...
Robbins, Kenneth E., Lemey, Philippe, Pybus, Oliver G., Jaffe, Harold W., Youngpairoj, Ae S., Brown, Teresa M., ...
Human immunodeficiency virus (HIV) type 1 subtype B sequences (whole envelope and the p17 region of gag) were obtained from peripheral blood mononuclear cell samples collected in 1981 from seven...
Courgnaud, Valérie, Salemi, Marco, Pourrut, Xavier, Mpoudi-Ngole, Eitel, Abela, Bernadette, Auzel, Philippe, ...
In the present study, we describe a new simian immunodeficiency virus (SIV), designated SIVgsn, naturally infecting greater spot-nosed monkeys (Cercopithecus nictitans) in Cameroon. Together with...
Tracing the origin and history of the HIV-2 epidemic
Lemey, Philippe, Pybus, Oliver G., Wang, Bin, Saksena, Nitin K., Salemi, Marco, Vandamme, Anne-Mieke
In this study we date the introduction of HIV-2 into the human population and estimate the epidemic history of HIV-2 subtype A in Guinea-Bissau, the putative geographic origin of HIV-2. The...
Mosaic Genomes of the Six Major Primate Lentivirus Lineages Revealed by Phylogenetic Analyses
Salemi, Marco, De Oliveira, Tulio, Courgnaud, Valerie, Moulton, Vincent, Holland, Barbara, Cassol, Sharon, ...
To clarify the origin and evolution of the primate lentiviruses (PLVs), which include human immunodeficiency virus types 1 and 2 as well as their simian relatives, simian immunodeficiency viruses...
Salemi, Marco, Fitch, Walter M., Ciccozzi, Massimo, Ruiz-Alvarez, Maria Jose, Rezza, Giovanni, Lewis, Martha J.
Salemi, Marco, Lamers, Susanna L., Yu, Stephanie, De Oliveira, T., Fitch, Walter M., McGrath, Michael S.
“Phylodynamic” analysis combines various statistical procedures that can be used to correlate the epidemiological and evolutionary behavior of viral pathogens with the immune system of the host....
De Oliveira, Tulio, Salemi, Marco, Gordon, Michelle, Vandamme, Anne-Mieke, Van Rensburg, Estrelita Janse, Engelbrecht, Susan, ...
A safe and effective HIV-1 vaccine is urgently needed to control the worldwide AIDS epidemic. Traditional methods of vaccine development have been frustratingly slow, and it is becoming increasingly...
Salemi, Marco, Burkhardt, Brant R., Gray, Rebecca R., Ghaffari, Guity, Sleasman, John W., Goodenow, Maureen M.
High-Resolution Molecular Epidemiology and Evolutionary History of HIV-1 Subtypes in Albania
Salemi, Marco, De Oliveira, Tulio, Ciccozzi, Massimo, Rezza, Giovanni, Goodenow, Maureen M.
Switzer, William M, Salemi, Marco, Qari, Shoukat H, Jia, Hongwei, Gray, Rebecca R, Katzourakis, Aris, ...
Extensive HIV-1 Intra-Host Recombination Is Common in Tissues with Abnormal Histopathology
Lamers, Susanna L., Salemi, Marco, Galligan, Derek C., De Oliveira, Tulio, Fogel, Gary B., Granier, Sara C., ...
There is evidence that immune-activated macrophages infected with the Human Immunodeficiency Virus (HIV) are associated with tissue damage and serve as a long-lived viral reservoir during therapy. In...