Spectronet: A package for computing spectra and median networks (2007)
Katharina Huber Michael, Michael Langton, Michael Hendy, David Penny, Vincent Moulton
Spectronet is a package for the analysis and visualization of complex evolutionary data that is not best represented by a bifurcating tree. Given an alignment in NEXUS format, the package works by...
Katharina T. Huber, Michael Langton, David Penny, Vincent Moulton, Michael Hendy
*To whom correspondence should be addressed.
Analytic solutions for three-taxon MLMC trees with variable rates across sites (2001)
Benny Chor, Michael Hendy, David Penny
We consider the problem of finding the maximum likelihood rooted tree under a molecular clock (MLMC), with three species and 2-state characters under a symmetric model of substitution. For...
Significance of the length of the shortest tree
Michael Steel, Michael Hendy, David Penny
Binary trees, Parsimony, Minimum-length tree, Fitch's algorithm, Distributions,
Spectral analysis of phylogenetic data
Phylogenetic trees, Bipartition, Hadamard transform, Hadamard conjugation, Spectrum, Nucleotide sequences, Distance data, Fast Hadamard Transform,