Evading the annotation bottleneck: using sequence similarity to search non-sequence gene data (2008)
Gilchrist, Michael J, Christensen, Mikkel B, Harland, Richard, Pollet, Nicolas, Smith, James C, Ueno, Naoto, ...
Abstract Background Non-sequence gene data (images, literature, etc.) can be found in many different public databases. Access to these data is mostly by text based methods using gene names; however,...
An ontology for Xenopusanatomy and development (2008)
Segerdell, Erik, Bowes, Jeff B, Pollet, Nicolas, Vize, Peter D
Abstract Background The frogs Xenopus laevis and Xenopus (Silurana) tropicalis are model systems that have produced a wealth of genetic, genomic, and developmental information. Xenbase is a model...
conditional experiments with a (2008)
Rainer König, Danila Baldessari, Nicolas Pollet, Christof Niehrs, Dr. Rainer König
of gene expression ratios for cDNA microarrays in multi-
Evaluation of time profile reconstruction from complex two-color microarray designs (2008)
Fierro, Ana C, Thuret, Raphael, Engelen, Kristof, Bernot, Gilles, Marchal, Kathleen, Pollet, Nicolas
Abstract Background As an alternative to the frequently used "reference design" for two-channel microarrays, other designs have been proposed. These designs have been shown to be more profitable from...
Evaluation of time profile reconstruction from complex two-color microarray designs (2008)
Thuret, Raphael, Bernot, Gilles, Pollet, Nicolas
ABSTRACT: BACKGROUND: As an alternative to the frequently used "reference design" for two-channel microarrays, other designs have been proposed. These designs have been shown to be more profitable...
Identification of CUG-BP1/EDEN-BP target mRNAs in Xenopus tropicalis. (2008)
Graindorge, Antoine, Le Tonquèze, Olivier, Thuret, Raphaël, Pollet, Nicolas, Osborne, Howard, Audic, Yann
The early development of many animals relies on the posttranscriptional regulations of maternally stored mRNAs. In particular, the translation of maternal mRNAs is tightly controlled during oocyte...
Identification of CUG-BP1/EDEN-BP target mRNAs in Xenopus tropicalis. (2008)
Graindorge, Antoine, Le Tonquèze, Olivier, Thuret, Raphaël, Pollet, Nicolas, Osborne, Howard, Audic, Yann
The early development of many animals relies on the posttranscriptional regulations of maternally stored mRNAs. In particular, the translation of maternal mRNAs is tightly controlled during oocyte...
Deutsch, Eric W, Ball, Catherine A, Berman, Jules J, Bova, G Steven, Brazma, Alvis, Bumgarner, Roger E, ...
One purpose of the biomedical literature is to report results in sufficient detail that the methods of data collection and analysis can be independently replicated and verified. Here we present...
Xenbase: a Xenopus biology and genomics resource (2008)
Bowes, Jeff B., Snyder, Kevin A., Segerdell, Erik, Gibb, Ross, Jarabek, Chris, Noumen, Etienne, ...
Xenbase (www.xenbase.org) is a model organism database integrating a diverse array of biological and genomic data on the frogs, Xenopus laevis and Xenopus (Silurana) tropicalis. Data is collected...
Identification of CUG-BP1/EDEN-BP target mRNAs in Xenopus tropicalis (2008)
Graindorge, Antoine, Le Tonquèze, Olivier, Thuret, Raphaël, Pollet, Nicolas, Osborne, H. Beverley, Audic, Yann
The early development of many animals relies on the posttranscriptional regulations of maternally stored mRNAs. In particular, the translation of maternal mRNAs is tightly controlled during oocyte...
Nicolas Pollet, Heiko A. Schmidt, Volker Gawantka, Martin Vingron, Christof Niehrs
Axeldb is a database storing and integrating gene expression patterns and DNA sequences identified in a large-scale in situ hybridization study in Xenopus laevis embryos. The data are organised in a...
Fierro, Ana C, Thuret, Raphaël, Coen, Laurent, Perron, Muriel, Demeneix, Barbara A, Wegnez, Maurice, ...
Xenopus tropicalis is an anuran amphibian species used as model in vertebrate comparative genomics. It provides the same advantages as Xenopus laevis but is diploid and has a smaller genome of 1.7...
A propos de la génomique fonctionnelle et du xénope (2007)
Résumé synthétique des activités de recherche Mon expérience de recherche débuta avec mon DEA puis ma thèse et se continua pendant un séjour post-doctoral à Heidelberg. Depuis Décembre...
Fierro, Ana C, Thuret, Raphaël, Coen, Laurent, Perron, Muriel, Demeneix, Barbara A, Wegnez, Maurice, ...
Abstract Background The western African clawed frog Xenopus tropicalis is an anuran amphibian species now used as model in vertebrate comparative genomics. It provides the same advantages as Xenopus...
Fierro, Ana C, Thuret, Raphaël, Coen, Laurent, Perron, Muriel, Demeneix, Barbara A, Wegnez, Maurice, ...
Xenopus tropicalis is an anuran amphibian species used as model in vertebrate comparative genomics. It provides the same advantages as Xenopus laevis but is diploid and has a smaller genome of 1.7...
Fierro, Ana C, Thuret, Raphaël, Coen, Laurent, Perron, Muriel, Demeneix, Barbara A, Wegnez, Maurice, ...
Xenopus tropicalis is an anuran amphibian species used as model in vertebrate comparative genomics. It provides the same advantages as Xenopus laevis but is diploid and has a smaller genome of 1.7...
Graindorge, Antoine, Thuret, Raphaël, Pollet, Nicolas, Osborne, H. Beverley, Audic, Yann
Cytoplasmic control of the adenylation state of mRNAs is a critical post-transcriptional process involved in the regulation of mRNAs stability and translational efficiency. The early development of...
A propos de la génomique fonctionnelle et du xénope (2005)
Résumé synthétique des activités de recherche Mon expérience de recherche débuta avec mon DEA puis ma thèse et se continua pendant un séjour post-doctoral à Heidelberg. Depuis Décembre...
A propos de la génomique fonctionnelle et du xénope (2005)
Résumé synthétique des activités de recherche Mon expérience de recherche débuta avec mon DEA puis ma thèse et se continua pendant un séjour post-doctoral à Heidelberg. Depuis Décembre...
A propos de la génomique fonctionnelle et du xénope (2005)
Résumé synthétique des activités de recherche Mon expérience de recherche débuta avec mon DEA puis ma thèse et se continua pendant un séjour post-doctoral à Heidelberg. Depuis Décembre...
Post-transcriptional regulation in Xenopus embryos: role and targets of EDEN-BP. (2005)
Osborne, Howard Beverley, Gautier-Courteille, Carole, Graindorge, Antoine, Barreau, Carine, Audic, Yann, Thuret, Raphaël, ...
EDEN (embryo deadenylation element)-dependent deadenylation is a regulatory process that was initially identified in Xenopus laevis early embryos and was subsequently shown to exist in Drosophila...
Post-transcriptional regulation in Xenopus embryos: role and targets of EDEN-BP. (2005)
Osborne, Howard Beverley, Gautier-Courteille, Carole, Graindorge, Antoine, Barreau, Carine, Audic, Yann, Thuret, Raphaël, ...
EDEN (embryo deadenylation element)-dependent deadenylation is a regulatory process that was initially identified in Xenopus laevis early embryos and was subsequently shown to exist in Drosophila...
Post-transcriptional regulation in Xenopus embryos: role and targets of EDEN-BP. (2005)
Osborne, Howard Beverley, Gautier-Courteille, Carole, Graindorge, Antoine, Barreau, Carine, Audic, Yann, Thuret, Raphaël, ...
EDEN (embryo deadenylation element)-dependent deadenylation is a regulatory process that was initially identified in Xenopus laevis early embryos and was subsequently shown to exist in Drosophila...
Les mouvements gravitaires rapides de grande ampleur mobilisent un versant rocheux (volume supérieur au million de m3) avec une cinétique élevée (>100 km.h-1). La méconnaissance des processus de...
Rainer Koè Nig, Danila Baldessari, Nicolas Pollet, Christof Niehrs, Roland Eils
Reliability of gene expression ratios for cDNA
König, Rainer, Baldessari, Danila, Pollet, Nicolas, Niehrs, Christof, Eils, Roland
In a typical gene expression profiling experiment with multiple conditions, a common reference sample is used for co‐hybridization with the samples to yield expression ratios. Differential...
Nrarp is a novel intracellular component of the Notch signaling pathway (2001)
Lamar, Elise, Deblandre, Gisèle, Wettstein, Daniel, Gawantka, Volker, Pollet, Nicolas, Niehrs, Christof, ...
Axeldb: a Xenopus laevis database focusing on gene expression (2000)
Pollet, Nicolas, Schmidt, Heiko A., Gawantka, Volker, Vingron, Martin, Niehrs, Christof
Axeldb is a database storing and integrating gene expression patterns and DNA sequences identified in a large-scale in situ hybridization study in Xenopus laevis embryos. The data are organised in a...
Periodic repression of Notch pathway genes governs the segmentation of Xenopus embryos (1999)
Jen, Wui-Chuong, Gawantka, Volker, Pollet, Nicolas, Niehrs, Christof, Kintner, Chris
Axeldb: a Xenopus laevis database focusing on gene expression
Pollet, Nicolas, Schmidt, Heiko A., Gawantka, Volker, Vingron, Martin, Niehrs, Christof
Axeldb is a database storing and integrating gene expression patterns and DNA sequences identified in a large-scale in situ hybridization study in Xenopus laevis embryos. The data are organised in a...
Periodic repression of Notch pathway genes governs the segmentation of Xenopus embryos
Jen, Wui-Chuong, Gawantka, Volker, Pollet, Nicolas, Niehrs, Christof, Kintner, Chris
During the development of the vertebrate embryo, genes encoding components of the Notch signaling pathway are required for subdividing the paraxial mesoderm into repeating segmental structures,...
König, Rainer, Baldessari, Danila, Pollet, Nicolas, Niehrs, Christof, Eils, Roland
In a typical gene expression profiling experiment with multiple conditions, a common reference sample is used for co-hybridization with the samples to yield expression ratios. Differential expression...
Identification of post-transcriptionally regulated Xenopus tropicalis maternal mRNAs by microarray
Graindorge, Antoine, Thuret, Raphaël, Pollet, Nicolas, Osborne, H. Beverley, Audic, Yann
Cytoplasmic control of the adenylation state of mRNAs is a critical post-transcriptional process involved in the regulation of mRNAs stability and translational efficiency. The early development of...
Nrarp is a novel intracellular component of the Notch signaling pathway
Lamar, Elise, Deblandre, Gisèle, Wettstein, Daniel, Gawantka, Volker, Pollet, Nicolas, Niehrs, Christof, ...
The Lin12/Notch receptors regulate cell fate during embryogenesis by activating the expression of downstream target genes. These receptors signal via their intracellular domain (ICD), which is...
Axeldb: a Xenopus laevis database focusing on gene expression
Pollet, Nicolas, Schmidt, Heiko A., Gawantka, Volker, Vingron, Martin, Niehrs, Christof
Axeldb is a database storing and integrating gene expression patterns and DNA sequences identified in a large-scale in situ hybridization study in Xenopus laevis embryos. The data are organised in a...
Nrarp is a novel intracellular component of the Notch signaling pathway
Lamar, Elise, Deblandre, Gisèle, Wettstein, Daniel, Gawantka, Volker, Pollet, Nicolas, Niehrs, Christof, ...
The Lin12/Notch receptors regulate cell fate during embryogenesis by activating the expression of downstream target genes. These receptors signal via their intracellular domain (ICD), which is...
Periodic repression of Notch pathway genes governs the segmentation of Xenopus embryos
Jen, Wui-Chuong, Gawantka, Volker, Pollet, Nicolas, Niehrs, Christof, Kintner, Chris
During the development of the vertebrate embryo, genes encoding components of the Notch signaling pathway are required for subdividing the paraxial mesoderm into repeating segmental structures,...
König, Rainer, Baldessari, Danila, Pollet, Nicolas, Niehrs, Christof, Eils, Roland
In a typical gene expression profiling experiment with multiple conditions, a common reference sample is used for co-hybridization with the samples to yield expression ratios. Differential expression...
Identification of post-transcriptionally regulated Xenopus tropicalis maternal mRNAs by microarray
Graindorge, Antoine, Thuret, Raphaël, Pollet, Nicolas, Osborne, H. Beverley, Audic, Yann
Cytoplasmic control of the adenylation state of mRNAs is a critical post-transcriptional process involved in the regulation of mRNAs stability and translational efficiency. The early development of...
Fierro, Ana C, Thuret, Raphaël, Coen, Laurent, Perron, Muriel, Demeneix, Barbara A, Wegnez, Maurice, ...
Xenbase: a Xenopus biology and genomics resource
Bowes, Jeff B., Snyder, Kevin A., Segerdell, Erik, Gibb, Ross, Jarabek, Chris, Noumen, Etienne, ...
Xenbase (www.xenbase.org) is a model organism database integrating a diverse array of biological and genomic data on the frogs, Xenopus laevis and Xenopus (Silurana) tropicalis. Data is collected...
Evaluation of time profile reconstruction from complex two-color microarray designs
Fierro, Ana C, Thuret, Raphael, Engelen, Kristof, Bernot, Gilles, Marchal, Kathleen, Pollet, Nicolas
Identification of CUG-BP1/EDEN-BP target mRNAs in Xenopus tropicalis
Graindorge, Antoine, Le Tonquèze, Olivier, Thuret, Raphaël, Pollet, Nicolas, Osborne, H. Beverley, Audic, Yann
The early development of many animals relies on the posttranscriptional regulations of maternally stored mRNAs. In particular, the translation of maternal mRNAs is tightly controlled during oocyte...