RNAs everywhere: Genome-wide annotation of structured RNAs (2007)
Backofen, R., Bernhart, S.H., Flamm, C., Fried, C., Fritzsch, G., Hackermüller, J., ...
Starting with the discovery of microRNAs and the advent of genome-wide transcriptomics, non-protein-coding transcripts have moved from a fringe topic to a central field research in molecular biology....
Structured RNAs in the ENCODE selected regions of the human genome (2007)
Washietl, S., Pedersen, J.S., Korbel, J.O., Stocsits, C., Gruber, A.R., Hackermüller, J., ...
Functional RNA structures play an important role both in the context of noncoding RNA transcripts as well as regulatory elements in mRNAs. Here we present a computational study to detect functional...
Computational RNomics of drosophilids (2007)
Rose, D., Hackermüller, J., Washietl, S., Reiche, K., Hertel, J., Findeiß, S., ...
Background: Recent experimental and computational studies have provided overwhelming evidence for a plethora of diverse transcripts that are unrelated to protein-coding genes. One subclass consists...
Birney, E, Stamatoyannopoulos, JA, Dutta, A, Guigo, R, Gingeras, TR, Margulies, EH, ...
We report the generation and analysis of functional data from multiple, diverse experiments performed on a targeted 1% of the human genomeas part of the pilot phase of the ENCODE Project. These data...