Sean O'Keeffe

The extracellular Leucine-Rich Repeat superfamily; a comparative survey and analysis of evolutionary relationships and expression patterns (2009)

Dolan, Jackie, Walshe, Karen, Alsbury, Samantha, Hokamp, Karsten, O'Keeffe, Sean, Okafuji, Tatsuya, ...

Abstract Correction to Dolan J, Walshe K, Alsbury S, Hokamp K, O'Keeffe S, Okafuji T, Miller SF, Tear G, Mitchell KJ: The extracellular leucine-rich repeat superfamily; a comparative survey and...

PASTAA: identifying transcription factors associated with sets of co-regulated genes (2009)

Roider, Helge G., Manke, Thomas, O'Keeffe, Sean, Vingron, Martin, Haas, Stefan A.

Motivation: A major challenge in regulatory genomics is the identification of associations between functional categories of genes (e.g. tissues, metabolic pathways) and their regulating transcription...

A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome (2008)

Sultan, Marc, Schulz, Marcel H., Hugues, Richard, Magen, Alon, Klingenhoff, Andreas, Scherf, Matthias, ...

The functional complexity of the human transcriptome is not yet fully elucidated. We report a high-throughput sequence of the human transcriptome from a human embryonic kidney and a B cell line. We...

The extracellular Leucine-Rich Repeat superfamily; a comparative survey and analysis of evolutionary relationships and expression patterns (2007)

Dolan, Jackie, Walshe, Karen, Alsbury, Samantha, Hokamp, Karsten, O'Keeffe, Sean, Okafuji, Tatsuya, ...

Abstract Background Leucine-rich repeats (LRRs) are highly versatile and evolvable protein-ligand interaction motifs found in a large number of proteins with diverse functions, including innate...

LitMiner and WikiGene: identifying problem-related key players of gene regulation using publication abstracts (2005)

Maier, Holger, Döhr, Stefanie, Grote, Korbinian, O'Keeffe, Sean, Werner, Thomas, De Angelis, Martin Hrabé, ...

The LitMiner software is a literature data-mining tool that facilitates the identification of major gene regulation key players related to a user-defined field of interest in PubMed abstracts. The...

LitMiner and WikiGene: identifying problem-related key players of gene regulation using publication abstracts

Maier, Holger, Döhr, Stefanie, Grote, Korbinian, O'Keeffe, Sean, Werner, Thomas, De Angelis, Martin Hrabé, ...

The LitMiner software is a literature data-mining tool that facilitates the identification of major gene regulation key players related to a user-defined field of interest in PubMed abstracts. The...

LitMiner and WikiGene: identifying problem-related key players of gene regulation using publication abstracts

Maier, Holger, Döhr, Stefanie, Grote, Korbinian, O'Keeffe, Sean, Werner, Thomas, De Angelis, Martin Hrabé, ...

The LitMiner software is a literature data-mining tool that facilitates the identification of major gene regulation key players related to a user-defined field of interest in PubMed abstracts. The...

The extracellular Leucine-Rich Repeat superfamily; a comparative survey and analysis of evolutionary relationships and expression patterns

Dolan, Jackie, Walshe, Karen, Alsbury, Samantha, Hokamp, Karsten, O'Keeffe, Sean, Okafuji, Tatsuya, ...

PASTAA: identifying transcription factors associated with sets of co-regulated genes

Roider, Helge G., Manke, Thomas, O'Keeffe, Sean, Vingron, Martin, Haas, Stefan A.

Motivation: A major challenge in regulatory genomics is the identification of associations between functional categories of genes (e.g. tissues, metabolic pathways) and their regulating transcription...

The extracellular Leucine-Rich Repeat superfamily; a comparative survey and analysis of evolutionary relationships and expression patterns

Dolan, Jackie, Walshe, Karen, Alsbury, Samantha, Hokamp, Karsten, O'Keeffe, Sean, Okafuji, Tatsuya, ...

Correction to Dolan J, Walshe K, Alsbury S, Hokamp K, O'Keeffe S, Okafuji T, Miller SF, Tear G, Mitchell KJ: The extracellular leucine-rich repeat superfamily; a comparative survey and analysis of...