Model-based clustering of array CGH data (2009)
Shah, Sohrab P., Cheung, K-John, Johnson, Nathalie A., Alain, Guillaume, Gascoyne, Randy D., Horsman, Douglas E., ...
Motivation: Analysis of array comparative genomic hybridization (aCGH) data for recurrent DNA copy number alterations from a cohort of patients can yield distinct sets of molecular signatures or...
Bmc Bioinformatics, Sohrab P Shah, David Ym He, Jessica N Sawkins, Jeffrey C Druce
Software Pegasys: software for executing and integrating analyses of biological sequences
Model based approaches to array CGH data analysis (2008)
DNA copy number alterations (CNAs) are genetic changes that can produce adverse effects in numerous human diseases, including cancer. CNAs are segments of DNA that have been deleted or amplified and...
Modeling recurrent DNA copy number alterations in array CGH data (2007)
Shah, Sohrab P., Lam, Wan L., Ng, Raymond T., Murphy, Kevin P.
Motivation: Recurrent DNA copy number alterations (CNA) measured with array comparative genomic hybridization (aCGH) reveal important molecular features of human genetics and disease. Studying aCGH...
Integrating copy number polymorphisms into array CGH analysis using a robust HMM (2006)
Shah, Sohrab P., Xuan, Xiang, DeLeeuw, Ron J., Khojasteh, Mehrnoush, Lam, Wan L., Ng, Raymond, ...
Motivation: Array comparative genomic hybridization (aCGH) is a pervasive technique used to identify chromosomal aberrations in human diseases, including cancer. Aberrations are defined as regions of...
Ulysses - an application for the projection of molecular interactions across species (2005)
Kemmer, Danielle, Huang, Yong, Shah, Sohrab P, Lim, Jonathan, Brumm, Jochen, Yuen, Macaire MS, ...
Abstract We developed Ulysses as a user-oriented system that uses a process called Interolog Analysis for the parallel analysis and display of protein interactions detected in various species....
Atlas – a data warehouse for integrative bioinformatics (2005)
Shah, Sohrab P, Huang, Yong, Xu, Tao, Yuen, Macaire MS, Ling, John, Ouellette, BF Francis
Abstract Background We present a biological data warehouse called Atlas that locally stores and integrates biological sequences, molecular interactions, homology information, functional annotations...
BMC Bioinformatics Database Atlas – a data warehouse for integrative bioinformatics (2005)
Sohrab P Shah, Yong Huang, Tao Xu, Macaire Ms Yuen, John Ling, Francis Ouellette, ...
This is an Open Access article distributed under the terms of the Creative Commons Attribution License
2005 Kemmer et Volume al. 6, Issue 12, Article R106 Open Access (2005)
Danielle Kemmer, Yong Huang, Sohrab P Shah, Jonathan Lim, Jochen Brumm, Macaire Ms Yuen, ...
Software Ulysses- an application for the projection of molecular interactions across species
Pegasys: software for executing and integrating analyses of biological sequences (2004)
Shah, Sohrab P, He, David YM, Sawkins, Jessica N, Druce, Jeffrey C, Quon, Gerald, Lett, Drew, ...
Abstract Background We present Pegasys – a flexible, modular and customizable software system that facilitates the execution and data integration from heterogeneous biological sequence analysis...
GeneComber: combining outputs of gene prediction programs for improved results (2003)
Shah, Sohrab P., McVicker, Graham P., Mackworth, Alan K., Rogic, Sanja, Ouellette, B. F. Francis
Summary: We recently demonstrated that combining the output from Genscan and HMMgene can provide increased accuracy of gene predictions. We have created a robust software system that runs algorithms...
prediction programs for improved results (2002)
Sohrab P. Shah, Graham P. Mcvicker, Alan K. Mackworth, Sanja Rogic
Pegasys: software for executing and integrating analyses of biological sequences
Shah, Sohrab P, He, David YM, Sawkins, Jessica N, Druce, Jeffrey C, Quon, Gerald, Lett, Drew, ...
Atlas – a data warehouse for integrative bioinformatics
Shah, Sohrab P, Huang, Yong, Xu, Tao, Yuen, Macaire MS, Ling, John, Ouellette, BF Francis
Ulysses - an application for the projection of molecular interactions across species
Kemmer, Danielle, Huang, Yong, Shah, Sohrab P, Lim, Jonathan, Brumm, Jochen, Yuen, Macaire MS, ...
Ulysses, a new software for the parallel analysis and display of protein interactions detected in various species, is described.
Pegasys: software for executing and integrating analyses of biological sequences
Shah, Sohrab P, He, David YM, Sawkins, Jessica N, Druce, Jeffrey C, Quon, Gerald, Lett, Drew, ...
Atlas – a data warehouse for integrative bioinformatics
Shah, Sohrab P, Huang, Yong, Xu, Tao, Yuen, Macaire MS, Ling, John, Ouellette, BF Francis
Ulysses - an application for the projection of molecular interactions across species
Kemmer, Danielle, Huang, Yong, Shah, Sohrab P, Lim, Jonathan, Brumm, Jochen, Yuen, Macaire MS, ...
Ulysses, a new software for the parallel analysis and display of protein interactions detected in various species, is described.
Model-based clustering of array CGH data
Shah, Sohrab P., Cheung, K-John, Johnson, Nathalie A., Alain, Guillaume, Gascoyne, Randy D., Horsman, Douglas E., ...
Motivation: Analysis of array comparative genomic hybridization (aCGH) data for recurrent DNA copy number alterations from a cohort of patients can yield distinct sets of molecular signatures or...