Stéphane Guindon, Olivier Gascuel
Abstract.—The increase in the number of large data sets and the complexity of current probabilistic sequence evolution models necessitates fast and reliable phylogeny reconstruction methods. We...
Identification of NF-kappaB responsive elements in follistatin related gene (2007)
Bartholin, Laurent, Guindon, Stéphane, Martel, Sylvie, Corbo, Laura, Rimokh, Ruth
Follistatin related gene (FLRG) has been previously identified from a chromosomal translocation observed in a B-cell chronic lymphocytic leukemia (B-CLL). FLRG (alternative names: follistatin-related...
Identification of NF-kappaB responsive elements in follistatin related gene (2007)
Bartholin, Laurent, Guindon, Stéphane, Martel, Sylvie, Corbo, Laura, Rimokh, Ruth
Follistatin related gene (FLRG) has been previously identified from a chromosomal translocation observed in a B-cell chronic lymphocytic leukemia (B-CLL). FLRG (alternative names: follistatin-related...
Identification of NF-kappaB responsive elements in follistatin related gene (2007)
Bartholin, Laurent, Guindon, Stéphane, Martel, Sylvie, Corbo, Laura, Rimokh, Ruth
Follistatin related gene (FLRG) has been previously identified from a chromosomal translocation observed in a B-cell chronic lymphocytic leukemia (B-CLL). FLRG (alternative names: follistatin-related...
Guindon, Stéphane, Black, Mik, Rodrigo, Allen
In this article, we consider the probabilistic identification of amino acid positions that evolve under positive selection as a multiple hypothesis testing problem. The null hypothesis “H0,s: site...
Guindon, Stéphane, Black, Mik, Rodrigo, Allen
In this article we consider the probabilistic identification of amino acid positions that evolve under positive selection as a multiple hypothesis testing problem. The null hypothesis "H0,s : site s...
PHYML Online--a web server for fast maximum likelihood-based phylogenetic inference (2005)
Stéphane Guindon, Franck Lethiec, Patrice Duroux, Olivier Gascuel
PHYML Online is a web interface to PHYML, a software that implements a fast and accurate heuristic for estimating maximum likelihood phylogenies from DNA and protein sequences. This tool provides the...
PHYML Online--a web server for fast maximum likelihood-based phylogenetic inference (2005)
Guindon, Stéphane, Lethiec, Franck, Duroux, Patrice, Gascuel, Olivier
PHYML Online is a web interface to PHYML, a software that implements a fast and accurate heuristic for estimating maximum likelihood phylogenies from DNA and protein sequences. This tool provides the...
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood (2003)
Guindon, Stéphane, Gascuel, Olivier
The increase in the number of large data sets and the complexity of current probabilistic sequence evolution models necessitates fast and reliable phylogeny reconstruction methods. We describe a new...
Guindon, Stéphane, Gascuel, Olivier
This paper deals with phylogenetic inference when the variability of substitution rates across sites (VRAS) is modeled by a gamma distribution. We show that underestimating VRAS, which results in...
Modeling the site-specific variation of selection patterns along lineages
Guindon, Stéphane, Rodrigo, Allen G., Dyer, Kelly A., Huelsenbeck, John P.
The unambiguous footprint of positive Darwinian selection in protein-coding DNA sequences is revealed by an excess of nonsynonymous substitutions over synonymous substitutions compared with the...
PHYML Online—a web server for fast maximum likelihood-based phylogenetic inference
Guindon, Stéphane, Lethiec, Franck, Duroux, Patrice, Gascuel, Olivier
PHYML Online is a web interface to PHYML, a software that implements a fast and accurate heuristic for estimating maximum likelihood phylogenies from DNA and protein sequences. This tool provides the...
Modeling the site-specific variation of selection patterns along lineages
Guindon, Stéphane, Rodrigo, Allen G., Dyer, Kelly A., Huelsenbeck, John P.
The unambiguous footprint of positive Darwinian selection in protein-coding DNA sequences is revealed by an excess of nonsynonymous substitutions over synonymous substitutions compared with the...
PHYML Online—a web server for fast maximum likelihood-based phylogenetic inference
Guindon, Stéphane, Lethiec, Franck, Duroux, Patrice, Gascuel, Olivier
PHYML Online is a web interface to PHYML, a software that implements a fast and accurate heuristic for estimating maximum likelihood phylogenies from DNA and protein sequences. This tool provides the...