PHYML Online - a web server for fast maximum likelihood-based phylogenetic inference (2008)
Stephane Guindon, Franck Lethiec, Patrice Duroux, Olivier Gascuel, Olivier Gascuel
PHYML Online is a web interface to PHYML, a software that implements a fast and accurate heuristic for estimating maximum likelihood phylogenies from DNA and protein sequences. This tool provides the...
Phylogeny.fr: robust phylogenetic analysis for the non-specialist (2008)
Dereeper, Alexis, Guignon, Valentin, Blanc, Guillaume, Audic, Stéphane, Buffet, Sylvain, Chevenet, François, ...
Phylogenetic analyses are central to many research areas in biology and typically involve the identification of homologous sequences, their multiple alignment, the phylogenetic reconstruction and the...
Phylogeny.fr: robust phylogenetic analysis for the non-specialist (2008)
Dereeper, Alexis, Guignon, Valentin, Blanc, Guillaume, Audic, Stéphane, Buffet, Sylvain, Chevenet, François, ...
Phylogenetic analyses are central to many research areas in biology and typically involve the identification of homologous sequences, their multiple alignment, the phylogenetic reconstruction and the...
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood (2007)
Guindon, Stephane, Gascuel, Olivier
The increase in the number of large data sets and the complexity of current probabilistic sequence evolution models necessitates fast and reliable phylogeny reconstruction methods. We describe a new...
Genomics, biogeography, and the diversification of placental mammals (2007)
E. Wildman, Derek, Uddin, Monica, C. Opazo, Juan, Liu, Guozhen, Lefort, Vincent, Guindon, Stephane, ...
Previous molecular analyses of mammalian evolutionary relationships involving a wide range of placental mammalian taxa have been restricted in size from one to two dozen gene loci and have not...
Genomics, biogeography, and the diversification of placental mammals (2007)
E. Wildman, Derek, Uddin, Monica, C. Opazo, Juan, Liu, Guozhen, Lefort, Vincent, Guindon, Stephane, ...
Previous molecular analyses of mammalian evolutionary relationships involving a wide range of placental mammalian taxa have been restricted in size from one to two dozen gene loci and have not...
Guindon, Stephane, Black, Mik, Rodrigo, Allen
In this article, we consider the probabilistic identification of amino acid positions that evolve under positive selection as a multiple hypothesis testing problem. The null hypothesis "H0,s: site s...
Guindon, Stephane, Black, Mik, Rodrigo, Allen
In this article, we consider the probabilistic identification of amino acid positions that evolve under positive selection as a multiple hypothesis testing problem. The null hypothesis "H0,s: site s...
Genomics, biogeography, and the diversification of placental mammals
Wildman, Derek E., Uddin, Monica, Opazo, Juan C., Liu, Guozhen, Lefort, Vincent, Guindon, Stephane, ...
Previous molecular analyses of mammalian evolutionary relationships involving a wide range of placental mammalian taxa have been restricted in size from one to two dozen gene loci and have not...