Cassol, Sharon, Libin, Pieter, Deforche, Koen, Pybus, Oliver G, ...
Human immunodeficiency virus type-1 (HIV-1), hepatitis B and C and other rapidly evolving viruses are characterized by extremely high levels of genetic diversity. To facilitate diagnosis and the...
Alcantara, Luiz Carlos Junior, Cassol, Sharon, Libin, Pieter, Deforche, Koen, Pybus, Oliver G., Van Ranst, Marc, ...
Human immunodeficiency virus type-1 (HIV-1), hepatitis B and C and other rapidly evolving viruses are characterized by extremely high levels of genetic diversity. To facilitate diagnosis and the...
Belshaw, Robert, De Oliveira, Tulio, Markowitz, Sidney, Rambaut, Andrew
The RNA Virus Database is a database and web application describing the genome organization and providing analytical tools for the 938 known species of RNA virus. It can identify submitted nucleotide...
De Oliveira, Tulio, Rambaut, Andrew, Pybus, Oliver G, Dunn, David, ...
With ongoing generation of viral genetic diversity and increasing levels of migration, the global human immunodeficiency virus type 1 (HIV-1) epidemic is becoming increasingly heterogeneous. In this...
De Oliveira, Tulio, Moreau, Domingos Ramon, De Carvalho Urpia, Caroline, Carvalho, Chandra Mara, ...
The analysis of genetic data for human immunodeficiency virus type 1 (HIV-1) and human T-cell lymphotropic virus type 1 (HTLV-1) is essential to improve treatment and public health strategies as well...
De Oliveira, Tulio, Rambaut, Andrew, Myers, Richard E, Gale, Catherine V, Dunn, David, ...
BACKGROUND: The routine use of drug resistance testing provides an abundant source of HIV-1 sequence data. However, it is not clear how reliable standard genotyping of these sequences is for...
Tracing the origin of Brazilian HTLV-1 as determined by analysis of host and viral genes (2006)
Alcantara, Luiz C.J., De Oliveira, Tulio, Gordon, Michelle, Pybus, Oliver, Mascarenhas, Rita E., Seixas, Magda O., ...
We compared the genetic diversity of the Brazilian human T-cell lymphotropic virus type 1 isolates with those found in KwaZulu–Natal (KZN), South Africa, and with the genetic background of the...
Tracing the origin of Brazilian HTLV-1 as determined by analysis of host and viral genes (2006)
Alcantara, Luiz C.J., De Oliveira, Tulio, Gordon, Michelle, Pybus, Oliver, Mascarenhas, Rita E., Seixas, Magda O., ...
We compared the genetic diversity of the Brazilian human T-cell lymphotropic virus type 1 isolates with those found in KwaZulu–Natal (KZN), South Africa, and with the genetic background of the...
An automated genotyping system for analysis of HIV-1 and other microbial sequences (2005)
De Oliveira, Tulio, Deforce, K., Cassol, Sharon, Salminen, M., Paraskevis, D., Seebreghts, C., ...
This is a pre-copy-editing, author-produced PDF of an article accepted for publication in Bioinformatics following peer review. The definitive publisher-authenticated version [De Oliveira,T,...
An automated genotyping system for analysis of HIV-1 and other microbial sequences (2005)
De Oliveira, Tulio, Deforce, K., Cassol, Sharon, Salminen, M., Paraskevis, D., Seebreghts, C., ...
This is a pre-copy-editing, author-produced PDF of an article accepted for publication in Bioinformatics following peer review. The definitive publisher-authenticated version [De Oliveira,T,...
Different epidemic potentials of the HIV-1B and C subtypes (2005)
De Oliveira, Tulio, Soares, Marcelo A, Pybus, Oliver, Dumans, Ana T, ...
HIV, the cause of AIDS in humans, is characterized by great genetic heterogeneity. In particular, HIV-1 group M subtypes are responsible for most of the infections worldwide. We investigate the...
BioAfrica's HIV-1 Proteomics Resource: Combining protein data with bioinformatics tools (2005)
Doherty, Ryan S, De Oliveira, Tulio, Seebregts, Chris, Danaviah, Sivapragashini, Gordon, Michelle, Cassol, Sharon
Abstract Most Internet online resources for investigating HIV biology contain either bioinformatics tools, protein information or sequence data. The objective of this study was to develop a...
An automated genotyping system for analysis of HIV-1 and other microbial sequences (2005)
De Oliveira, Tulio, Deforche, Koen, Cassol, Sharon, Salminen, Mika, Paraskevis, Dimitris, Seebregts, Chris, ...
Motivation: Genetic analysis of HIV-1 is important not only for vaccine development, but also to guide treatment strategies, track the emergence of new viral variants and ensure that diagnostic...
An automated genotyping system for analysis of HIV-1 and other microbial sequences (2005)
De Oliveira, Tulio, Deforche, Koen, Cassol, Sharon, Salminen, Mika, Paraskevis, Dimitris, Seebregts, Chris, ...
Motivation: Genetic analysis of HIV-1 is important not only for vaccine development, but also to guide treatment strategies, track the emergence of new viral variants and ensure that diagnostic...
De Oliveira, Tulio, Engelbrecht, Susan, Janse Van Rensburg, Estrelita, Gordon, Michelle, Bishop, Karen, Zur Megede, Jan, ...
This article was written by Prof Janse van Rensburg and Prof Cassol before they joined the University of Pretoria.
De Oliveira, Tulio, Engelbrecht, Susan, Janse Van Rensburg, Estrelita, Gordon, Michelle, Bishop, Karen, Zur Megede, Jan, ...
This article was written by Prof Janse van Rensburg and Prof Cassol before they joined the University of Pretoria.
Mosaic genomes of the six major primate lentivirus lineages revealed by phylogenetic analyses (2003)
De Oliveira, Tulio, Courgnaud, Valerie, Moulton, Vincent, Holland, Barbara, Cassol, Sharon, ...
To clarify the origin and evolution of the primate lentiviruses (PLVs), which include human immunodeficiency virus types 1 and 2 as well as their simian relatives, simian immunodeficiency viruses...
Gordon, Michelle, De Oliveira, Tulio, Bishop, Karen, Coovadia, H.M., Madurai, L., Engelbrecht, Susan, ...
This article was written by Prof Janse van Rensburg and Prof Cassol before they joined the University of Pretoria.
Gordon, Michelle, De Oliveira, Tulio, Bishop, Karen, Coovadia, H.M., Madurai, L., Engelbrecht, Susan, ...
This article was written by Prof Janse van Rensburg and Prof Cassol before they joined the University of Pretoria.
Zur Megede, Jan, Engelbrecht, Susan, De Oliveira, Tulio, Cassol, Sharon, Scriba, Thomas Jens, Janse Van Rensburg, Estrelita, ...
The publisher does not allow open access to the full text of this item. If you however need access to the full text, please contact the Collection Administrator, or access the item via the e-journal...
Zur Megede, Jan, Engelbrecht, Susan, De Oliveira, Tulio, Cassol, Sharon, Scriba, Thomas Jens, Janse Van Rensburg, Estrelita, ...
The publisher does not allow open access to the full text of this item. If you however need access to the full text, please contact the Collection Administrator, or access the item via the e-journal...
Palmarini, Massimo, Hallwirth, Claus, York, Denis, Murgia, Claudio, De Oliveira, Tulio, Spencer, Thomas, ...
Integrated into the sheep genome are 15 to 20 copies of type D endogenous loci that are highly related to two exogenous oncogenic viruses, jaagsiekte sheep retrovirus (JSRV) and enzootic nasal tumor...
Mosaic Genomes of the Six Major Primate Lentivirus Lineages Revealed by Phylogenetic Analyses
Salemi, Marco, De Oliveira, Tulio, Courgnaud, Valerie, Moulton, Vincent, Holland, Barbara, Cassol, Sharon, ...
To clarify the origin and evolution of the primate lentiviruses (PLVs), which include human immunodeficiency virus types 1 and 2 as well as their simian relatives, simian immunodeficiency viruses...
De Oliveira, Tulio, Engelbrecht, Susan, Janse Van Rensburg, Estrelita, Gordon, Michelle, Bishop, Karen, Zur Megede, Jan, ...
Naturally occurring polymorphisms in the protease of human immunodeficiency virus type 1 (HIV-1) subtype C would be expected to lead to adaptive (compensatory) changes in protease cleavage sites. To...
BioAfrica's HIV-1 Proteomics Resource: Combining protein data with bioinformatics tools
Doherty, Ryan S, De Oliveira, Tulio, Seebregts, Chris, Danaviah, Sivapragashini, Gordon, Michelle, Cassol, Sharon
Most Internet online resources for investigating HIV biology contain either bioinformatics tools, protein information or sequence data. The objective of this study was to develop a comprehensive...
De Oliveira, Tulio, Salemi, Marco, Gordon, Michelle, Vandamme, Anne-Mieke, Van Rensburg, Estrelita Janse, Engelbrecht, Susan, ...
A safe and effective HIV-1 vaccine is urgently needed to control the worldwide AIDS epidemic. Traditional methods of vaccine development have been frustratingly slow, and it is becoming increasingly...
Palmarini, Massimo, Hallwirth, Claus, York, Denis, Murgia, Claudio, De Oliveira, Tulio, Spencer, Thomas, ...
Integrated into the sheep genome are 15 to 20 copies of type D endogenous loci that are highly related to two exogenous oncogenic viruses, jaagsiekte sheep retrovirus (JSRV) and enzootic nasal tumor...
Mosaic Genomes of the Six Major Primate Lentivirus Lineages Revealed by Phylogenetic Analyses
Salemi, Marco, De Oliveira, Tulio, Courgnaud, Valerie, Moulton, Vincent, Holland, Barbara, Cassol, Sharon, ...
To clarify the origin and evolution of the primate lentiviruses (PLVs), which include human immunodeficiency virus types 1 and 2 as well as their simian relatives, simian immunodeficiency viruses...
De Oliveira, Tulio, Engelbrecht, Susan, Janse Van Rensburg, Estrelita, Gordon, Michelle, Bishop, Karen, Zur Megede, Jan, ...
Naturally occurring polymorphisms in the protease of human immunodeficiency virus type 1 (HIV-1) subtype C would be expected to lead to adaptive (compensatory) changes in protease cleavage sites. To...
BioAfrica's HIV-1 Proteomics Resource: Combining protein data with bioinformatics tools
Doherty, Ryan S, De Oliveira, Tulio, Seebregts, Chris, Danaviah, Sivapragashini, Gordon, Michelle, Cassol, Sharon
Most Internet online resources for investigating HIV biology contain either bioinformatics tools, protein information or sequence data. The objective of this study was to develop a comprehensive...
De Oliveira, Tulio, Salemi, Marco, Gordon, Michelle, Vandamme, Anne-Mieke, Van Rensburg, Estrelita Janse, Engelbrecht, Susan, ...
A safe and effective HIV-1 vaccine is urgently needed to control the worldwide AIDS epidemic. Traditional methods of vaccine development have been frustratingly slow, and it is becoming increasingly...
Sequential Broadening of CTL Responses in Early HIV-1 Infection Is Associated with Viral Escape
Karlsson, Annika C., Iversen, Astrid K.N., Chapman, Joan M., De Oliveira, Tulio, Spotts, Gerald, McMichael, Andrew J., ...
High-Resolution Molecular Epidemiology and Evolutionary History of HIV-1 Subtypes in Albania
Salemi, Marco, De Oliveira, Tulio, Ciccozzi, Massimo, Rezza, Giovanni, Goodenow, Maureen M.
Gifford, Robert J., De Oliveira, Tulio, Rambaut, Andrew, Pybus, Oliver G., Dunn, David, Vandamme, Anne-Mieke, ...
With ongoing generation of viral genetic diversity and increasing levels of migration, the global human immunodeficiency virus type 1 (HIV-1) epidemic is becoming increasingly heterogeneous. In this...
Armitage, Andrew E., Katzourakis, Aris, De Oliveira, Tulio, Welch, John J., Belshaw, Robert, Bishop, Kate N., ...
The human polynucleotide cytidine deaminases APOBEC3G (hA3G) and APOBEC3F (hA3F) are antiviral restriction factors capable of inducing extensive plus-strand guanine-to-adenine (G-to-A) hypermutation...
Extensive HIV-1 Intra-Host Recombination Is Common in Tissues with Abnormal Histopathology
Lamers, Susanna L., Salemi, Marco, Galligan, Derek C., De Oliveira, Tulio, Fogel, Gary B., Granier, Sara C., ...
There is evidence that immune-activated macrophages infected with the Human Immunodeficiency Virus (HIV) are associated with tissue damage and serve as a long-lived viral reservoir during therapy. In...
Belshaw, Robert, De Oliveira, Tulio, Markowitz, Sidney, Rambaut, Andrew
The RNA Virus Database is a database and web application describing the genome organization and providing analytical tools for the 938 known species of RNA virus. It can identify submitted nucleotide...
Alcantara, Luiz Carlos Junior, Cassol, Sharon, Libin, Pieter, Deforche, Koen, Pybus, Oliver G., Van Ranst, Marc, ...
Human immunodeficiency virus type-1 (HIV-1), hepatitis B and C and other rapidly evolving viruses are characterized by extremely high levels of genetic diversity. To facilitate diagnosis and the...