Statistical detection of cooperative transcription factors with similarity adjustment (2009)
Pape, Utz J., Klein, Holger, Vingron, Martin
Motivation: Statistical assessment of cis-regulatory modules (CRMs) is a crucial task in computational biology. Usually, one concludes from exceptional co-occurrences of DNA motifs that the...
Pape, Utz J., Rahmann, Sven, Vingron, Martin
Motivation: Transcription factors (TFs) play a key role in gene regulation by binding to target sequences. In silico prediction of potential binding of a TF to a binding site is a well-studied...
Pape, Utz J., Rahmann, Sven, Sun, Fengzhu, Vingron, Martin
Transcription factors play a key role in gene regulation by interacting with specific binding sites or motifs. Therefore, enrichment of binding motifs is important for genome annotation and efficient...
Toenjes, Martje, Schueler, Markus, Hammer, Stefanie, Pape, Utz J., Fischer, Jenny J., Felix Berger, Felix, ...
We present an integrative approach combining sophisticated techniques to construct cardiac gene regulatory networks based on correlated gene expression and optimized prediction of transcription...
Pape, Utz J., Rahmann, Sven, Vingron, Martin
Motivation: Transcription factors (TFs) play a key role in gene regulation by binding to target sequences. In silico prediction of potential binding of a TF to a binding site is a well-studied...
A new statistical model to select target sequences bound by transcription factors (2006)
Pape, Utz J., Grossmann, Steffen, Hammer, Stefanie, Sperling, Silke, Vingron, Martin
Transcription factors (TFs) play a key role in gene regulation by binding to target sequences. In silico prediction of potential binding to a sequence is a main task in computational biology....
A gene expression map of Arabidopsis thaliana development (2005)
Schmid,Markus, Davison,Timothy S., Henz,Stefan R., Pape,Utz J., Demar,Monika, Vingron,Martin, ...
A gene expression map of Arabidopsis thaliana development (2005)
Schmid, Markus, Davison, Timothy S., Henz, Stefan R., Pape, Utz J., Demar, Monika, Vingron, Martin, ...
A gene expression map of Arabidopsis development
Schmid, Markus, Davison, Timothy S., Henz, Stefan R., Pape, Utz J., Demar, Monika, Vingron, Martin, ...
Regulatory regions of plant genes tend to be more compact than those of animal genes, but the complement of transcription factors encoded in plant genomes is as large or larger than that found in...
Statistical detection of cooperative transcription factors with similarity adjustment
Pape, Utz J., Klein, Holger, Vingron, Martin
Motivation: Statistical assessment of cis-regulatory modules (CRMs) is a crucial task in computational biology. Usually, one concludes from exceptional co-occurrences of DNA motifs that the...