Running head: Protein Distance Measures and Tree Building Methods (2008)
Volker Hollich, Lena Milchert, Lars Arvestad, Volker Hollich
Distance-based methods are popular for reconstructing evolutionary trees of protein sequences, mainly because of their speed and generality. A number of variants of the classical neighbor-joining...
† These authors contributed equally to this work. RESEARCH ARTICLE Contact: (2008)
Kristoffer Forslund, Anna Henricson, Volker Hollich, Erik Sonnhammer
protein domain architecture evolution MBE Advance Access published November 19, 2007 Running head: Analysis of protein architecture evolution
Domain Tree-Based Analysis of Protein Architecture Evolution (2008)
Forslund, Kristoffer, Henricson, Anna, Hollich, Volker, Sonnhammer, Erik L. L.
Understanding the dynamics behind domain architecture evolution is of great importance to unravel the functions of proteins. Complex architectures have been created throughout evolution by...
PfamAlyzer: domain-centric homology search (2007)
Hollich, Volker, Sonnhammer, Erik L.L.
Summary: PfamAlyzer is a Java applet that enables exploration of Pfam domain architectures using a user-friendly graphical interface. It can search the UniProt protein database for a domain pattern....
Pfam: clans, web tools and services (2006)
Robert D. Finn, Jaina Mistry, Benjamin Schuster-böckler, Sam Griffiths-jones, Volker Hollich, Timo Lassmann, ...
Pfam is a database of protein families that currently contains 7973 entries (release 18.0). A recent development in Pfam has enabled the grouping of related families into clans. Pfam clans are...
Pfam: clans, web tools and services (2006)
Finn, Robert D., Mistry, Jaina, Schuster-Böckler, Benjamin, Griffiths-Jones, Sam, Hollich, Volker, Lassmann, Timo, ...
Pfam is a database of protein families that currently contains 7973 entries (release 18.0). A recent development in Pfam has enabled the grouping of related families into clans. Pfam clans are...
Scoredist: A simple and robust protein sequence distance estimator (2005)
Sonnhammer, Erik LL, Hollich, Volker
Abstract Background Distance-based methods are popular for reconstructing evolutionary trees thanks to their speed and generality. A number of methods exist for estimating distances from sequence...
Hollich, Volker, Milchert, Lena, Arvestad, Lars, Sonnhammer, Erik L.L.
Distance-based methods are popular for reconstructing evolutionary trees of protein sequences, mainly because of their speed and generality. A number of variants of the classical neighbor-joining...
Hollich, Volker, Milchert, Lena, Arvestad, Lars, Sonnhammer, Erik L. L.
Distance-based methods are popular for reconstructing evolutionary trees of protein sequences, mainly because of their speed and generality. A number of variants of the classical neighbor-joining...
Hollich, Volker, Milchert, Lena, Arvestad, Lars, Sonnhammer, Erik L.L.
Distance-based methods are popular for reconstructing evolutionary trees of protein sequences, mainly because of their speed and generality. A number of variants of the classical neighbor-joining...
Erik Ll Sonnhammer, Volker Hollich
Background: Distance-based methods are popular for reconstructing evolutionary trees thanks to their speed and generality. A number of methods exist for estimating distances from sequence alignments,...
The Pfam protein families database (2004)
Bateman, Alex, Coin, Lachlan, Durbin, Richard, Finn, Robert D., Hollich, Volker, Griffiths-Jones, Sam, ...
Pfam is a large collection of protein families and domains. Over the past 2 years the number of families in Pfam has doubled and now stands at 6190 (version 10.0). Methodology improvements for...
OrthoGUI: graphical presentation of Orthostrapper results (2002)
Summary: Orthostrapper is a program that calculates orthology support values for pairs of sequences in a multiple alignment (Storm and Sonnhammer, Bioinformatics, 18, 92--99, 2002). Here we present...
OrthoGUI: graphical presentation of Orthostrapper results (2002)
Hollich, Volker, Storm, Christian E. V., Sonnhammer, Erik L. L
Summary: Orthostrapper is a program that calculates orthology support values for pairs of sequences in a multiple alignment (Storm and Sonnhammer, Bioinformatics, 18, 92–99, 2002). Here we present...
The Pfam protein families database
Bateman, Alex, Coin, Lachlan, Durbin, Richard, Finn, Robert D., Hollich, Volker, Griffiths-Jones, Sam, ...
Pfam is a large collection of protein families and domains. Over the past 2 years the number of families in Pfam has doubled and now stands at 6190 (version 10.0). Methodology improvements for...
Pfam: clans, web tools and services
Finn, Robert D., Mistry, Jaina, Schuster-Böckler, Benjamin, Griffiths-Jones, Sam, Hollich, Volker, Lassmann, Timo, ...
Pfam is a database of protein families that currently contains 7973 entries (release 18.0). A recent development in Pfam has enabled the grouping of related families into clans. Pfam clans are...
The Pfam protein families database
Bateman, Alex, Coin, Lachlan, Durbin, Richard, Finn, Robert D., Hollich, Volker, Griffiths-Jones, Sam, ...
Pfam is a large collection of protein families and domains. Over the past 2 years the number of families in Pfam has doubled and now stands at 6190 (version 10.0). Methodology improvements for...
Pfam: clans, web tools and services
Finn, Robert D., Mistry, Jaina, Schuster-Böckler, Benjamin, Griffiths-Jones, Sam, Hollich, Volker, Lassmann, Timo, ...
Pfam is a database of protein families that currently contains 7973 entries (release 18.0). A recent development in Pfam has enabled the grouping of related families into clans. Pfam clans are...