PREDICTING B CELL EPITOPE RESIDUES WITH NETWORK TOPOLOGY BASED AMINO ACID INDICES (2008)
We evaluate the performance of six amino acid indices in B cell epitope residue prediction using the classical sliding window method on five data sets. Four of the indices: i.e. relative...
Hayes, C. Nelson, Diez, Diego, Joannin, Nicolas, Honda, Wataru, Kanehisa, Minoru, Wahlgren, Mats, ...
Summary: Infectious diseases are a major threat to global public health and prosperity. The causative agents consist of a suite of pathogens, ranging from bacteria to viruses, including fungi,...
Yamanishi, Yoshihiro, Araki, Michihiro, Gutteridge, Alex, Honda, Wataru, Kanehisa, Minoru
Motivation: The identification of interactions between drugs and target proteins is a key area in genomic drug discovery. Therefore, there is a strong incentive to develop new methods capable of...
Wataru Honda, Shuichi Kawashima, Minoru Kanehisa
The immune system is known to have a greatly important function for human. It must be not only exclusive against pathogens or foreign molecules but also tolerant to self antigens. That is, the system...
MIMOX: a web tool for phage display based epitope mapping (2006)
Huang, Jian, Gutteridge, Alex, Honda, Wataru, Kanehisa, Minoru
Abstract Background Phage display is widely used in basic research such as the exploration of protein-protein interaction sites and networks, and applied research such as the development of new...
CED: a conformational epitope database (2006)
Abstract Background Antigen epitopes provide valuable information useful for disease prevention, diagnosis, and treatment. Recently, more and more databases focusing on different types of epitopes...
BMC Bioinformatics BioMed Central (2006)
Jian Huang, Alex Gutteridge, Wataru Honda, Minoru Kanehisa, Open Access
Software MIMOX: a web tool for phage display based epitope mapping
MIMOX: a web tool for phage display based epitope mapping
Huang, Jian, Gutteridge, Alex, Honda, Wataru, Kanehisa, Minoru
MIMOX: a web tool for phage display based epitope mapping
Huang, Jian, Gutteridge, Alex, Honda, Wataru, Kanehisa, Minoru
varDB: a pathogen-specific sequence database of protein families involved in antigenic variation
Hayes, C. Nelson, Diez, Diego, Joannin, Nicolas, Honda, Wataru, Kanehisa, Minoru, Wahlgren, Mats, ...
Summary: Infectious diseases are a major threat to global public health and prosperity. The causative agents consist of a suite of pathogens, ranging from bacteria to viruses, including fungi,...
Prediction of drug–target interaction networks from the integration of chemical and genomic spaces
Yamanishi, Yoshihiro, Araki, Michihiro, Gutteridge, Alex, Honda, Wataru, Kanehisa, Minoru
Motivation: The identification of interactions between drugs and target proteins is a key area in genomic drug discovery. Therefore, there is a strong incentive to develop new methods capable of...