Y. Komeiji

472 A HIGH PERFORMANCE SYSTEM FOR MOLECULAR DYNAMICS SIMULATION OF BIOMOLECULES USING A SPECIAL-PURPOSE COMPUTER (2009)

Y. Komeiji, H. Yokoyama, M. Uebayasi, M. Taui, T. Fukushige, D. Sugimoto, ...

GRAPE (GRavity PipE) processors are special purpose computers for simulation of classical particles. The performanceof MD-GRAPE, one of the GRAPEs developed for molecular dynamics, was investigated....

Change in conformation by DNA-peptide association: molecular dynamics of the Hin-recombinase-hixL complex.

Komeiji, Y, Uebayasi, M

The Hin-DNA complex is a molecular complex formed by the C-terminal 52mer peptide of the Hin-recombinase and a synthetic 13-bp hixL DNA. The peptide has three alpha-helices, the second and third of...

Change in conformation by DNA-peptide association: molecular dynamics of the Hin-recombinase-hixL complex.

Komeiji, Y, Uebayasi, M

The Hin-DNA complex is a molecular complex formed by the C-terminal 52mer peptide of the Hin-recombinase and a synthetic 13-bp hixL DNA. The peptide has three alpha-helices, the second and third of...