Chen Wie-Hua, Ge Xiaomeng, Wang Weiwei, Yu Jun, Hu Songnian
Abstract Background Diapause is a reversible state of developmental suspension and found among diverse taxa, from plants to animals, including marsupials and some other mammals. Although previous...
Zhu Jingui, Sun Yongqiao, Zhao Fa-Qing, Yu Jun, Craig Roger, Hu Songnian
Abstract Background Tarantula has been used as a model system for studying skeletal muscle structure and function, yet data on the genes expressed in tarantula muscle are lacking. Results We...
Abstract Background Divergently-paired genes (DPGs) are defined as two adjacent genes that are transcribed toward the opposite direction (or from different DNA strands) and shared their transcription...
Ding Feng, Tang Petrus, Hsu Mei-Hua, Cui Peng, Hu Songnian, Yu Jun, ...
Abstract Background Streptococcus pneumoniae serotype 14 is one of the most common pneumococcal serotypes that cause invasive pneumococcal diseases worldwide. Serotype 14 often expresses resistance...
Dinamica populacional e imunologia : estudo do caso de estreptococos e estafilococos (2008)
When bacteria overcome physical barrier (skin or mucus of digestive and intestinal tracts), they induce local inflammatory reaction due to the action of innate immune system. We develop a...
How many human genes can be defined as housekeeping with current expression data? (2008)
Zhu Jiang, He Fuhong, Song Shuhui, Wang Jing, Yu Jun
Abstract Background Housekeeping (HK) genes are ubiquitously expressed in all tissue/cell types and constitute a basal transcriptome for the maintenance of basic cellular functions. Partitioning...
Li Limei, Fei Zhaoliang, Ren Jianke, Sun Ruilin, Liu Zhihui, Sheng Zhejin, ...
Abstract Background Interleukin 1 beta (IL-1β) plays an important role in a number of chronic and acute inflammatory diseases. To understand the role of IL-1β in disease processes and...
Ge Xiaomeng, Chen Weihua, Song Shuhui, Wang Weiwei, Hu Songnian, Yu Jun
Abstract Background The mature embryo of rice (Oryza sativa, L.) is a synchronized and integrated tissue mass laying the foundation at molecular level for its growth, development, and differentiation...
LIM only 4 is overexpressed in late stage pancreas cancer (2008)
Yu Jun, Ohuchida Kenoki, Nakata Kohei, Mizumoto Kazuhiro, Cui Lin, Fujita Hayato, ...
Abstract Background LIM-only 4 (LMO4), a member of the LIM-only (LMO) subfamily of LIM domain-containing transcription factors, was initially reported to have an oncogenic role in breast cancer. We...
Cui Peng, Ji Rimutu, Ding Feng, Qi Dan, Gao Hongwei, Meng He, ...
Abstract Background The family Camelidae that evolved in North America during the Eocene survived with two distinct tribes, Camelini and Lamini. To investigate the evolutionary relationship between...
Song Shuhui, Qu Hongzhu, Chen Chen, Hu Songnian, Yu Jun
Abstract Background It was proposed that differentially-expressed genes, aside from genetic variations affecting protein processing and functioning, between hybrid and its parents provide essential...
Abstract Background The migratory locust (Locusta migratoria) is an orthopteran pest and a representative member of hemimetabolous insects for biological studies. Its transcriptomic data provide...
Computing Ka and Ks with a consideration of unequal transitional substitutions (2006)
Abstract Background Approximate methods for estimating nonsynonymous and synonymous substitution rates (Ka and Ks) among protein-coding sequences have adopted different mutation (substitution)...
Zhang Bing, Liu Qinghua, Yin Wei, Zhang Xiaowei, Huang Yijun, Luo Yingfeng, ...
Abstract Background The snake venom gland is a specialized organ, which synthesizes and secretes the complex and abundant toxin proteins. Though gene expression in the snake venom gland has been...
Jun, Yu, Guo, Qing-Long, You, Qi-Dong, Zhao, Li, Gu, Hong-Yan, Yang, Yong, ...
Molecular mechanisms of cell cycle arrest caused by gambogic acid (GA), a natural product isolated from the gamboge resin of Garcinia hanburryi tree, has been investigated using BGC-823 human gastric...
The Genomes of Oryza sativa: A History of Duplications (2005)
Yu Jun, Wang Jun, Lin Wei, Li Songgang, Li Heng, Zhou Jun, ...
We report improved whole-genome shotgun sequences for the genomes of indica and japonica rice, both with multimegabase contiguity, or almost 1,000-fold improvement over the drafts of 2002. Tested...
Pigs in sequence space: A 0.66X coverage pig genome survey based on shotgun sequencing (2005)
Wernersson Rasmus, Schierup Mikkel, Jørgensen Frank, Gorodkin Jan, Panitz Frank, Stærfeldt Hans-Henrik, ...
Abstract Background Comparative whole genome analysis of Mammalia can benefit from the addition of more species. The pig is an obvious choice due to its economic and medical importance as well as its...
Bae, Choongsik, Jun, Yu, Lee, Jookwang
SAE 2002 Powertrain & Fluid Systems Conference, San Diego,
A sort-based data distribution management matching algorithm for HLA (2002)
The High Level Architecture (HLA) provides several Data Distribution Management (DDM) services to reduce the transmission and reception of irrelevant data. These services rely on the computation of...